Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G47290 - ( phosphoinositide-specific phospholipase C family protein )
38 Proteins interacs with AT3G47290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G13490 | Predictedtwo hybrid | FSW = 0.0118
| Unknown | AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING |
AT3G09630 | PredictedPhenotypic Suppression | FSW = 0.0326
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G20260 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1625
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G45170 | PredictedPhenotypic Suppression | FSW = 0.0968
| Unknown | ATATG8E MICROTUBULE BINDING |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0419
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13450 | PredictedPhenotypic Enhancement | FSW = 0.1806
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT3G22890 | PredictedPhenotypic Suppression | FSW = 0.1244
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.1548
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G56160 | PredictedPhenotypic Enhancement | FSW = 0.1666
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT1G10070 | PredictedPhenotypic Enhancement | FSW = 0.0571
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G04750 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic EnhancementSynthetic LethalityPhenotypic Suppression | FSW = 0.1670
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G21680 | PredictedPhenotypic Suppression | FSW = 0.0556
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G47000 | PredictedPhenotypic Suppression | FSW = 0.0382
| Unknown | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE |
AT4G14350 | PredictedPhenotypic Enhancement | FSW = 0.1257
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G06960 | PredictedPhenotypic Enhancement | FSW = 0.1130
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT4G27070 | PredictedPhenotypic Enhancement | FSW = 0.0676
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT4G16420 | PredictedPhenotypic Enhancement | FSW = 0.0527
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.1189
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G26690 | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defectPhenotypic Enhancement | FSW = 0.1862
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.2146
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G47830 | PredictedPhenotypic Enhancement | FSW = 0.2024
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G54560 | PredictedPhenotypic Enhancement | FSW = 0.0960
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G78770 | PredictedPhenotypic Enhancement | FSW = 0.1160
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G80710 | PredictedPhenotypic Suppression | FSW = 0.1262
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G12200 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1068
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G13210 | PredictedPhenotypic Enhancement | FSW = 0.0457
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.1766
| Unknown | UNKNOWN PROTEIN |
AT4G21490 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2100
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1526
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G16980 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2492
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G20340 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic RescuePhenotypic SuppressionAffinity Capture-MS | FSW = 0.3988
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G45620 | PredictedPhenotypic Enhancementsynthetic growth defectPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1566
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT3G54630 | Predictedtwo hybrid | FSW = 0.0087
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT4G29580 | PredictedPhenotypic Enhancement | FSW = 0.2450
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT4G36050 | PredictedPhenotypic Suppression | FSW = 0.0928
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic EnhancementAffinity Capture-WesternPhenotypic EnhancementPhenotypic Suppression | FSW = 0.2404
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G65980 | PredictedPhenotypic Suppression | FSW = 0.0513
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454