Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G47460 - ( ATSMC2 transporter )
25 Proteins interacs with AT3G47460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G18190 | Predictedtwo hybrid | FSW = 0.1552
| Unknown | GC2 (GOLGIN CANDIDATE 2) |
AT1G70070 | PredictedGene fusion method | FSW = 0.0282
| Unknown | EMB25 (EMBRYO DEFECTIVE 25) ATP-DEPENDENT HELICASE/ RNA HELICASE |
AT3G54670 | Predictedinteraction predictiontwo hybridinterologs mappingCo-expression | FSW = 0.0566
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT1G62740 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G44950 | Predictedtwo hybridinteraction prediction | FSW = 0.0252
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G32590 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2368
| Unknown | INVOLVED IN MITOSIS MITOTIC CELL CYCLE LOCATED IN NUCLEUS CHLOROPLAST EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BARREN (INTERPROIPR008418) HAS 340 BLAST HITS TO 330 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 135 FUNGI - 102 PLANTS - 21 VIRUSES - 1 OTHER EUKARYOTES - 81 (SOURCE NCBI BLINK) |
AT1G59660 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0497
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT2G27170 | Predictedinteraction predictiontwo hybridCo-expression | FSW = 0.1321
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT3G57060 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3750
| Unknown | BINDING |
AT4G25120 | Predictedtwo hybrid | FSW = 0.0095
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G37630 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1465
| Unknown | EMB2656 (EMBRYO DEFECTIVE 2656) BINDING |
AT5G53770 | PredictedAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.0135
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT4G33620 | Predictedinterologs mapping | FSW = 0.0730
| Unknown | ULP1 PROTEASE FAMILY PROTEIN |
AT5G48600 | PredictedReconstituted ComplexCo-purificationAffinity Capture-WesternAffinity Capture-MSCo-expression | FSW = 0.2582
| Unknown | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER |
AT5G61460 | Predictedsynthetic growth defect | FSW = 0.0336
| Unknown | MIM (HYPERSENSITIVE TO MMS IRRADIATION AND MMC) ATP BINDING |
AT1G12270 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0365
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G10390 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0477
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT3G54630 | PredictedAffinity Capture-Westerninterologs mappingtwo hybridinteraction predictionCo-expression | FSW = 0.0270
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT1G53570 | PredictedPhenotypic Enhancement | FSW = 0.0248
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G07660 | Predictedsynthetic growth defect | FSW = 0.0334
| Unknown | STRUCTURAL MAINTENANCE OF CHROMOSOMES (SMC) FAMILY PROTEIN |
AT5G54750 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
AT1G55255 | Predictedtwo hybrid | FSW = 0.0307
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
AT5G62410 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2828
| Unknown | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454