Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44950 - ( HUB1 (HISTONE MONO-UBIQUITINATION 1) protein binding / protein homodimerization/ ubiquitin-protein ligase/ zinc ion binding )
122 Proteins interacs with AT2G44950Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G55250 | Experimental | FSW = 0.0288
| Unknown | HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING |
AT1G14400 | Experimentaltwo hybrid | FSW = 0.2620
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT2G02760 | Experimentaltwo hybrid | FSW = 0.4509
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT1G55255 | Experimentalsplit-reporter assaytwo hybrid | FSW = 0.4705
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0067
| Class C:mitochondrioncytosol | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT2G29080 | Predictedsynthetic growth defect | FSW = 0.0174
| Class C:mitochondrion | FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE |
AT4G17300 | PredictedSynthetic Lethality | FSW = 0.0177
| Class C:mitochondrion | NS1 ASPARAGINE-TRNA LIGASE |
AT1G75510 | PredictedPhenotypic Enhancement | FSW = 0.2170
| Class C:mitochondrion | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT4G02930 | Predictedsynthetic growth defect | FSW = 0.0061
| Class C:mitochondrion | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT1G09760 | Predictedsynthetic growth defect | FSW = 0.0162
| Class C:cytosol | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT2G30260 | Predictedsynthetic growth defect | FSW = 0.0351
| Class C:cytosol | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0264
| Class C:cytosol | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT1G61000 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.0338
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT4G02620 | Predictedsynthetic growth defect | FSW = 0.0486
| Unknown | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0325
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G31780 | Predictedsynthetic growth defect | FSW = 0.0407
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G55400 | Predictedsynthetic growth defect | FSW = 0.0144
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT3G22110 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1034
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G36340 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0230
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT2G06510 | PredictedPhenotypic Enhancement | FSW = 0.0584
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT4G38495 | PredictedSynthetic Lethality | FSW = 0.0656
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK) |
AT5G43530 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.1722
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT5G67630 | PredictedPhenotypic Suppression | FSW = 0.0701
| Unknown | DNA HELICASE PUTATIVE |
AT5G63110 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1901
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G73820 | PredictedPhenotypic Enhancement | FSW = 0.0463
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0530
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT3G54670 | Predictedtwo hybridinteraction prediction | FSW = 0.0229
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.2885
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT2G28190 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2233
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.1258
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT4G01690 | Predictedsynthetic growth defect | FSW = 0.1775
| Unknown | PPOX PROTOPORPHYRINOGEN OXIDASE |
AT5G08080 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0049
| Unknown | SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.1188
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.2013
| Unknown | SEC22 TRANSPORTER |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0131
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT5G63880 | Predictedsynthetic growth defect | FSW = 0.0477
| Unknown | VPS201 |
AT3G12810 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.3131
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G16980 | PredictedSynthetic Lethality | FSW = 0.0983
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.1373
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT3G18130 | Predictedsynthetic growth defect | FSW = 0.0227
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.2351
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G36740 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3299
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2889
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G15430 | PredictedPhenotypic Enhancement | FSW = 0.1188
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G19210 | Predictedsynthetic growth defect | FSW = 0.2131
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G19120 | Predictedsynthetic growth defect | FSW = 0.1383
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G13540 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | ABH1 (ABA HYPERSENSITIVE 1) RNA CAP BINDING |
AT3G17590 | Predictedsynthetic growth defect | FSW = 0.0584
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT1G71270 | Predictedsynthetic growth defect | FSW = 0.0509
| Unknown | POK (POKY POLLEN TUBE) |
AT5G66020 | Predictedsynthetic growth defect | FSW = 0.1203
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT2G31970 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.2395
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G19910 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.3306
| Unknown | SOH1 FAMILY PROTEIN |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.2056
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G54260 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2662
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G05170 | Predictedsynthetic growth defect | FSW = 0.0588
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G77140 | Predictedsynthetic growth defect | FSW = 0.0614
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.1591
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G54860 | Predictedsynthetic growth defect | FSW = 0.1272
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
AT1G66510 | Predictedtwo hybrid | FSW = 0.0067
| Unknown | AAR2 PROTEIN FAMILY |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0102
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G37280 | Predictedtwo hybrid | FSW = 0.0558
| Unknown | MRG FAMILY PROTEIN |
AT5G62540 | Predictedtwo hybrid | FSW = 0.0360
| Unknown | UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE |
AT1G04020 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2976
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G08780 | Predictedtwo hybridinteraction prediction | FSW = 0.1764
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G12470 | Predictedsynthetic growth defect | FSW = 0.1208
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
AT1G49540 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1944
| Unknown | NUCLEOTIDE BINDING |
AT1G51310 | PredictedPhenotypic Enhancement | FSW = 0.1036
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT1G51710 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2237
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G52740 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2707
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G59890 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2539
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G60430 | Predictedsynthetic growth defect | FSW = 0.0881
| Unknown | ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE |
AT1G60490 | PredictedSynthetic Lethality | FSW = 0.1275
| Unknown | ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT1G64600 | Predictedsynthetic growth defect | FSW = 0.0106
| Unknown | COPPER ION BINDING / METHYLTRANSFERASE |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.2723
| Unknown | SGA2 |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.2547
| Unknown | F-BOX FAMILY PROTEIN |
AT1G80410 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2579
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G27170 | Predictedtwo hybridinteraction prediction | FSW = 0.0269
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G34770 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0435
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G40570 | Predictedsynthetic growth defect | FSW = 0.0168
| Unknown | INITIATOR TRNA PHOSPHORIBOSYL TRANSFERASE FAMILY PROTEIN |
AT2G44150 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1926
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT1G08840 | Predictedsynthetic growth defect | FSW = 0.1101
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G15780 | PredictedPhenotypic Enhancement | FSW = 0.1196
| Unknown | UNKNOWN PROTEIN |
AT1G54390 | PredictedSynthetic Lethality | FSW = 0.0836
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G61040 | PredictedPhenotypic Suppression | FSW = 0.2496
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT3G18520 | PredictedPhenotypic Suppression | FSW = 0.1432
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G18860 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2472
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22590 | PredictedPhenotypic Suppression | FSW = 0.2890
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G26020 | PredictedPhenotypic Enhancement | FSW = 0.0802
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT3G42660 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3147
| Unknown | NUCLEOTIDE BINDING |
AT3G49650 | PredictedPhenotypic Enhancement | FSW = 0.0110
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.1898
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.2134
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G30870 | PredictedPhenotypic Enhancement | FSW = 0.1225
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT4G33240 | PredictedPhenotypic Enhancement | FSW = 0.2400
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT4G38630 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.1745
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.2029
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10260 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.2054
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10270 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.1567
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G10790 | PredictedPhenotypic Suppression | FSW = 0.1432
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.2397
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13680 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1321
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G13780 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3256
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G23290 | PredictedPhenotypic Suppression | FSW = 0.1282
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G26680 | PredictedSynthetic Lethality | FSW = 0.2374
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G42000 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1575
| Unknown | ORMDL FAMILY PROTEIN |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.2521
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G45600 | PredictedSynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.3276
| Unknown | GAS41 PROTEIN BINDING |
AT5G49510 | PredictedPhenotypic Suppression | FSW = 0.1662
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G50320 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1964
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G65180 | PredictedPhenotypic Enhancement | FSW = 0.1828
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT3G09560 | PredictedSynthetic Lethality | FSW = 0.0767
| Unknown | LIPIN FAMILY PROTEIN |
AT3G19770 | Predictedsynthetic growth defect | FSW = 0.0437
| Unknown | VPS9A RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT3G22142 | Predictedsynthetic growth defect | FSW = 0.1585
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
AT3G47460 | Predictedtwo hybridinteraction prediction | FSW = 0.0252
| Unknown | ATSMC2 TRANSPORTER |
AT4G22140 | Predictedsynthetic growth defect | FSW = 0.1190
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G29380 | Predictedsynthetic growth defect | FSW = 0.0763
| Unknown | PROTEIN KINASE FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G15070 | Predictedsynthetic growth defect | FSW = 0.0059
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G27970 | Predictedsynthetic growth defect | FSW = 0.2521
| Unknown | BINDING |
AT5G63670 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1286
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G66100 | PredictedPhenotypic Enhancement | FSW = 0.2141
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT3G46330 | PredictedGene fusion method | FSW = 0.0256
| Unknown | MEE39 (MATERNAL EFFECT EMBRYO ARREST 39) KINASE |
AT4G39110 | PredictedGene fusion method | FSW = 0.0256
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454