Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09560 - ( lipin family protein )

22 Proteins interacs with AT3G09560
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G65687

Predicted

two hybrid

FSW = 0.0324

Unknown

TRANSPORTER-RELATED
AT3G11630

Predicted

Synthetic Lethality

FSW = 0.0353

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G12520

Predicted

Synthetic Lethality

FSW = 0.0436

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT3G57530

Predicted

biochemical

FSW = 0.0593

Unknown

CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT5G12480

Predicted

biochemical

FSW = 0.0138

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G17520

Predicted

biochemical

FSW = 0.0070

Unknown

IRE1A ENDORIBONUCLEASE/ KINASE
AT1G80680

Predicted

two hybrid

FSW = 0.1600

Unknown

SAR3 (SUPPRESSOR OF AUXIN RESISTANCE 3) PORIN
AT2G44950

Predicted

Synthetic Lethality

FSW = 0.0767

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G79250

Predicted

biochemical

FSW = 0.0376

Unknown

AGC17 (AGC KINASE 17) KINASE
AT5G63860

Predicted

Phenotypic Enhancement

interologs mapping

two hybrid

FSW = 0.0465

Unknown

UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0215

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

Synthetic Lethality

FSW = 0.0633

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G37840

Predicted

biochemical

FSW = 0.0308

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G01090

Predicted

biochemical

FSW = 0.0298

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G06483

Predicted

biochemical

FSW = 0.0228

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT4G00720

Predicted

biochemical

FSW = 0.0267

Unknown

ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0449

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT3G03110

Predicted

Synthetic Rescue

Phenotypic Enhancement

FSW = 0.0178

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER
AT5G55190

Predicted

interologs mapping

FSW = 0.0239

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G55255Predicted

Synthetic Lethality

FSW = 0.0765

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G14400

Predicted

Synthetic Lethality

FSW = 0.0684

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT5G42870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1280

Unknown

LIPIN FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454