Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G06483 - ( PDK (PYRUVATE DEHYDROGENASE KINASE) ATP binding / histidine phosphotransfer kinase/ pyruvate dehydrogenase (acetyl-transferring) kinase )
99 Proteins interacs with AT3G06483Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1719
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G54220![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSin vitro | FSW = 0.0595
| Unknown | DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE PUTATIVE |
AT5G10350![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-Western | FSW = 0.1449
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G22110![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.0650
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G10450![]() ![]() ![]() ![]() | Predictedin vivoin vitro | FSW = 0.0158
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G36620![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G65430![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0907
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G55920![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0781
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G13930![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSin vitroReconstituted Complex | FSW = 0.0357
| Unknown | DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE PUTATIVE |
AT3G55400![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0721
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G44610![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0320
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G54670![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0224
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G38480![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0151
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G71860![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0545
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT2G01630![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0298
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
AT4G36490![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1320
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0107
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G45850![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0364
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G32670![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationSynthetic Rescue | FSW = 0.2796
| Unknown | ATVAMP725 |
AT3G57530![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0154
| Unknown | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G42470 | Predictedbiochemical | FSW = 0.0392
| Unknown | PATCHED FAMILY PROTEIN |
AT4G21680![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G26110![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0181
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT4G33090![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0832
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT5G03860![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0206
| Unknown | MLS (MALATE SYNTHASE) MALATE SYNTHASE |
AT3G04460![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1273
| Unknown | PEX12 PROTEIN BINDING / ZINC ION BINDING |
AT4G16760![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0092
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT5G27670![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0293
| Unknown | HTA7 (HISTONE H2A 7) DNA BINDING |
AT3G13445![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0855
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G52250![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1471
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G23930![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0073
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT1G76300![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.0681
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G40290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G25340![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Western | FSW = 0.2666
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G60980![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1102
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G52200![]() ![]() ![]() ![]() | Predictedin vitroAffinity Capture-MSReconstituted Complex | FSW = 0.0350
| Unknown | LTA3 ATP BINDING / DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE |
AT5G02050![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0042
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G06850![]() ![]() ![]() ![]() | Predictedin vivo | FSW = 0.0214
| Unknown | BCE2 ACETYLTRANSFERASE/ ALPHA-KETOACID DEHYDROGENASE/ DIHYDROLIPOAMIDE BRANCHED CHAIN ACYLTRANSFERASE |
AT2G46320![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0196
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G49920![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0928
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT4G10040![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0147
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT3G18480![]() ![]() ![]() ![]() | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1404
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT4G31180![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0134
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT2G19980![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1421
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1036
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G59500![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0152
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
AT5G38460![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0117
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT2G05170![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0408
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G17810![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0325
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT3G60360![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationSynthetic Rescue | FSW = 0.3149
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G39200![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1467
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G62800![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0790
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT4G16420![]() ![]() ![]() ![]() | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.0878
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G28730![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0039
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT2G29540![]() ![]() ![]() ![]() | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1024
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G17190![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0973
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G36760![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0218
| Unknown | ATAPP1 N-1-NAPHTHYLPHTHALAMIC ACID BINDING / AMINOPEPTIDASE |
AT3G13450![]() ![]() ![]() ![]() | Predictedin vivo | FSW = 0.0214
| Unknown | DIN4 (DARK INDUCIBLE 4) 3-METHYL-2-OXOBUTANOATE DEHYDROGENASE (2-METHYLPROPANOYL-TRANSFERRING)/ CATALYTIC |
AT5G18940![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | MO25 FAMILY PROTEIN |
AT1G01230![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0143
| Unknown | ORMDL FAMILY PROTEIN |
AT1G03350![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0392
| Unknown | BSD DOMAIN-CONTAINING PROTEIN |
AT1G09300![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0105
| Unknown | METALLOPEPTIDASE M24 FAMILY PROTEIN |
AT1G13580![]() ![]() ![]() ![]() | PredictedSynthetic LethalitybiochemicalSynthetic LethalityPhenotypic Enhancement | FSW = 0.1449
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G17145![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0250
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G26690![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0978
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G29970![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4121
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G34580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0959
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G37840![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0172
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G05960![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G22290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0503
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
AT1G26320![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1028
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G60680![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0495
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G78770![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.1552
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G34750![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternCo-purification | FSW = 0.2507
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G46070![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G18660![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0480
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G18850![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0644
| Unknown | LPAT5 ACYLTRANSFERASE |
AT4G14710![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.1062
| Unknown | ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT4G19645![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0998
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G23895![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0495
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED |
AT5G01430![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0920
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G44830![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1344
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G64760![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1446
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT5G67540![]() ![]() ![]() ![]() | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1626
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G07270![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0087
| Unknown | GTP CYCLOHYDROLASE I |
AT3G09560![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0228
| Unknown | LIPIN FAMILY PROTEIN |
AT3G11450![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0041
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT3G16840![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0171
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G21460![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1146
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G24010![]() ![]() ![]() ![]() | PredictedSynthetic LethalityAffinity Capture-WesternSynthetic Lethality | FSW = 0.0696
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT4G22540![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0092
| Unknown | ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING |
AT5G02170![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0099
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G06600![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0839
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G14060![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1440
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G14180![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1882
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G24260![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0099
| Unknown | PROLYL OLIGOPEPTIDASE FAMILY PROTEIN |
AT5G57020![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0103
| Unknown | NMT1 (MYRISTOYL-COAPROTEIN N-MYRISTOYLTRANSFERASE) GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE/ MYRISTOYLTRANSFERASE |
AT2G37420![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.1890
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454