Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G60680 - ( aldo/keto reductase family protein )
91 Proteins interacs with AT1G60680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0251
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.1029
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.1287
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G26590 | Predictedbiochemical | FSW = 0.0328
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0362
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G14320 | PredictedAffinity Capture-Western | FSW = 0.0330
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G60690 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1414
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G33650 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0738
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G09660 | Predictedsynthetic growth defect | FSW = 0.1548
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0839
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0813
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT5G06290 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.0698
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G53580 | PredictedPhylogenetic profile method | FSW = 0.1130
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G10070 | PredictedbiochemicalbiochemicalAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternbiochemicalSynthetic Lethality | FSW = 0.1265
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G04420 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0226
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G06690 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1196
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G53480 | Predictedinteraction prediction | FSW = 0.0265
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT3G13560 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0356
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0065
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G04750 | Predictedsynthetic growth defect | FSW = 0.1383
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G04690 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1452
| Unknown | KAB1 (POTASSIUM CHANNEL BETA SUBUNIT) OXIDOREDUCTASE/ POTASSIUM CHANNEL |
AT3G47960 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0279
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.0652
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0060
| Unknown | SGP1 GTP BINDING |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0679
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0110
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT2G20510 | PredictedSynthetic Lethality | FSW = 0.0465
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT1G29330 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0184
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT5G08335 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0522
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0650
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT5G10330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhenotypic Enhancementinterologs mapping | FSW = 0.0933
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.1536
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0589
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G10920 | PredictedAffinity Capture-Western | FSW = 0.0218
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.1097
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G10210 | PredictedbiochemicalAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mappingbiochemical | FSW = 0.1311
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G22550 | Predictedinterologs mapping | FSW = 0.0792
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0610
| Unknown | UNKNOWN PROTEIN |
AT1G55060 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1121
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1332
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G26450 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0093
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0913
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.1751
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G47830 | Predictedsynthetic growth defect | FSW = 0.1637
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G66590 | Predictedsynthetic growth defect | FSW = 0.1373
| Unknown | COX19 FAMILY PROTEIN |
AT1G72340 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0309
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.1053
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G80710 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0392
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G27920 | Predictedinterologs mapping | FSW = 0.0731
| Unknown | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE |
AT2G31260 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0921
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G38490 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.1275
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G41340 | PredictedAffinity Capture-WesternAffinity Capture-MSbiochemical | FSW = 0.0550
| Unknown | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G04710 | PredictedSynthetic Rescue | FSW = 0.0188
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.0723
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G18850 | PredictedPhenotypic Suppression | FSW = 0.0769
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.1548
| Unknown | UNKNOWN PROTEIN |
AT3G25900 | PredictedPhenotypic Enhancement | FSW = 0.1536
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G45240 | Predictedsynthetic growth defect | FSW = 0.1414
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G48960 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
AT4G14320 | PredictedAffinity Capture-WesternDosage Growth Defect | FSW = 0.0358
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT4G21490 | Predictedsynthetic growth defect | FSW = 0.1580
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G25950 | PredictedAffinity Capture-WesternbiochemicalSynthetic Rescue | FSW = 0.0805
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G27130 | Predictedsynthetic growth defect | FSW = 0.1833
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G35620 | Predictedinterologs mapping | FSW = 0.0392
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G16980 | Predictedsynthetic growth defect | FSW = 0.1427
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G39500 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0544
| Unknown | PATTERN FORMATION PROTEIN PUTATIVE |
AT5G45620 | Predictedsynthetic growth defect | FSW = 0.1048
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G66610 | PredictedbiochemicalSynthetic Lethality | FSW = 0.0350
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT5G66620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0733
| Unknown | DAR6 (DA1-RELATED PROTEIN 6) ZINC ION BINDING |
AT2G32415 | Predictedinterologs mapping | FSW = 0.0610
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT2G43190 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT3G06483 | PredictedPhenotypic Enhancement | FSW = 0.0495
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G12200 | PredictedPhenotypic Suppression | FSW = 0.0671
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G00980 | PredictedAffinity Capture-MS | FSW = 0.0610
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.1058
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G26510 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT4G36050 | PredictedPhenotypic Suppression | FSW = 0.1458
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G13150 | Predictedinterologs mapping | FSW = 0.0582
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.1439
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT2G37770 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1516
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G62420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1740
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G10810 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1839
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G60710 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2597
| Unknown | ATB2 OXIDOREDUCTASE |
AT1G60730 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1335
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G01670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1335
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT2G37760 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0990
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G21250 | PredictedPhylogenetic profile method | FSW = 0.0777
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G21260 | PredictedPhylogenetic profile method | FSW = 0.1569
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454