Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G25400 - ( phosphate translocator-related )
65 Proteins interacs with AT5G25400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G22890 | PredictedSynthetic Lethalitytwo hybrid | FSW = 0.1674
| Class C:plastid | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT4G33650 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1818
| Class C:plastid | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT4G32390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0495
| Class C:plastid | PHOSPHATE TRANSLOCATOR-RELATED |
AT2G25520 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0508
| Class C:plastid | PHOSPHATE TRANSLOCATOR-RELATED |
AT5G11230 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0489
| Class C:plastid | ORGANIC ANION TRANSMEMBRANE TRANSPORTER |
AT1G56050 | PredictedPhenotypic Enhancement | FSW = 0.2401
| Class C:plastid | GTP-BINDING PROTEIN-RELATED |
AT5G51820 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2199
| Class C:plastid | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.1118
| Class C:plastid | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.1803
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0739
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G31780 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.1054
| Unknown | UNKNOWN PROTEIN |
AT5G07090 | PredictedPhenotypic Enhancement | FSW = 0.0675
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0461
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74560 | PredictedReconstituted ComplexSynthetic Rescue | FSW = 0.1879
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT1G45145 | PredictedPhenotypic Enhancement | FSW = 0.0785
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G60540 | PredictedPhenotypic Enhancement | FSW = 0.1490
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT1G02500 | PredictedSynthetic Lethality | FSW = 0.0559
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT5G45970 | PredictedAffinity Capture-MS | FSW = 0.0035
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT4G08800 | PredictedSynthetic Lethality | FSW = 0.2172
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G11730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0402
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0435
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.2161
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G58430 | PredictedSynthetic Rescue | FSW = 0.1617
| Unknown | ATEXO70B1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1) PROTEIN BINDING |
AT3G08720 | PredictedAffinity Capture-Westerntwo hybridPhenotypic Enhancement | FSW = 0.0597
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT1G79020 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MSAffinity Capture-MSinterologs mappingSynthetic Lethality | FSW = 0.1837
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0898
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G24490 | PredictedAffinity Capture-MS | FSW = 0.0054
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0766
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.1925
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G07140 | PredictedPhenotypic Enhancement | FSW = 0.1788
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT4G39200 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1675
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G42120 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2114
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.0487
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.1523
| Unknown | UNKNOWN PROTEIN |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0600
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.1233
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34580 | PredictedPhenotypic Enhancement | FSW = 0.0138
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G43910 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2525
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G52500 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2419
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G01600 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3713
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.1679
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.0597
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT2G48100 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2270
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G13720 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.2238
| Unknown | PRA8 |
AT3G50780 | PredictedPhenotypic Enhancement | FSW = 0.0849
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G59540 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2071
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G00800 | PredictedPhenotypic Suppression | FSW = 0.1372
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G26510 | PredictedAffinity Capture-MS | FSW = 0.1019
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G07070 | PredictedAffinity Capture-MS | FSW = 0.0769
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G13010 | PredictedAffinity Capture-MS | FSW = 0.0861
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G13150 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G14060 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2244
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT1G60680 | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G66810 | PredictedAffinity Capture-MS | FSW = 0.0671
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G06470 | Predictedinterologs mapping | FSW = 0.0487
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G17520 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT4G04695 | PredictedAffinity Capture-MS | FSW = 0.1151
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G37830 | PredictedAffinity Capture-MS | FSW = 0.1307
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
AT5G59850 | PredictedAffinity Capture-MS | FSW = 0.0720
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454