Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37770 - ( aldo/keto reductase family protein )
19 Proteins interacs with AT2G37770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0208
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G34460 | PredictedGene fusion method | FSW = 0.0346
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G32410 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | CESA1 (CELLULOSE SYNTHASE 1) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G37790 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1800
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G21250 | PredictedPhenotypic EnhancementGene neighbors methodPhylogenetic profile method | FSW = 0.2125
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT3G18860 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.0249
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT1G60710 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3394
| Unknown | ATB2 OXIDOREDUCTASE |
AT1G60680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1516
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G62420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.8295
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G10810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4167
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G59950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6464
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT2G37760 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3838
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G01670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4082
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT1G60730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2051
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G53880 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1636
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G21260 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.7951
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT1G59960 | PredictedPhylogenetic profile method | FSW = 0.4938
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT5G56130 | PredictedGene fusion method | FSW = 0.2353
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454