Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72340 - ( eukaryotic translation initiation factor 2B family protein / eIF-2B family protein )
56 Proteins interacs with AT1G72340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G13490 | Predictedinteraction prediction | FSW = 0.0082
| Unknown | AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING |
AT2G01250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0300
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G58730 | Predictedinteraction prediction | FSW = 0.0250
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
AT5G07090 | PredictedAffinity Capture-Western | FSW = 0.0767
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT1G14320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1112
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G05020 | Predictedinteraction prediction | FSW = 0.0180
| Unknown | NDB2 (NAD(P)H DEHYDROGENASE B2) FAD BINDING / DISULFIDE OXIDOREDUCTASE/ OXIDOREDUCTASE |
AT3G60820 | Predictedtwo hybrid | FSW = 0.0187
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G08530 | Predictedinteraction prediction | FSW = 0.0192
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT1G10070 | PredictedSynthetic LethalitySynthetic LethalitybiochemicalPhenotypic Suppression | FSW = 0.0494
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT2G37690 | Predictedinteraction prediction | FSW = 0.0108
| Unknown | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE |
AT5G54810 | Predictedinteraction prediction | FSW = 0.0177
| Unknown | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1) TRYPTOPHAN SYNTHASE |
AT2G33340 | Predictedtwo hybrid | FSW = 0.0048
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G75950 | Predictedtwo hybrid | FSW = 0.0023
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G18190 | Predictedinteraction prediction | FSW = 0.0167
| Unknown | CHAPERONIN PUTATIVE |
AT4G39280 | Predictedinteraction prediction | FSW = 0.0166
| Unknown | PHENYLALANYL-TRNA SYNTHETASE PUTATIVE / PHENYLALANINE--TRNA LIGASE PUTATIVE |
AT1G47250 | Predictedtwo hybrid | FSW = 0.0276
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G20920 | Predictedin vitrointeraction prediction | FSW = 0.1292
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT5G42790 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G01710 | Predictedinteraction prediction | FSW = 0.0301
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT5G57015 | Predictedinteraction prediction | FSW = 0.0061
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G19120 | Predictedinteraction prediction | FSW = 0.0078
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G40290 | Predictedinteraction prediction | FSW = 0.0498
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT5G48870 | Predictedinteraction prediction | FSW = 0.0194
| Unknown | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT2G19980 | PredictedSynthetic Lethality | FSW = 0.0081
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G07880 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT3G07790 | Predictedtwo hybrid | FSW = 0.0328
| Unknown | DGCR14-RELATED |
AT3G51130 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | UNKNOWN PROTEIN |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0323
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G56580 | Predictedtwo hybrid | FSW = 0.0154
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT3G07300 | Predictedin vitroin vitrointeraction prediction | FSW = 0.1148
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT4G18300 | PredictedAffinity Capture-MS | FSW = 0.1141
| Unknown | EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN |
AT1G10210 | PredictedSynthetic LethalityPhenotypic EnhancementSynthetic LethalityReconstituted Complextwo hybrid | FSW = 0.0403
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G60680 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0309
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G55060 | Predictedsynthetic growth defect | FSW = 0.0656
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT2G32050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1231
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT2G46070 | PredictedAffinity Capture-Western | FSW = 0.0571
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT4G14320 | PredictedAffinity Capture-MStwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1547
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT5G06130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.1888
| Unknown | CHAPERONE PROTEIN DNAJ-RELATED |
AT2G26695 | PredictedSynthetic Rescue | FSW = 0.0576
| Unknown | BINDING / ZINC ION BINDING |
AT3G08700 | PredictedAffinity Capture-MS | FSW = 0.0806
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G06140 | Predictedtwo hybrid | FSW = 0.0207
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
AT5G49970 | Predictedtwo hybrid | FSW = 0.0054
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0050
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G25240 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | SERINE-TYPE ENDOPEPTIDASE INHIBITOR |
AT5G38640 | Predictedinteraction prediction | FSW = 0.1859
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT2G39640 | Predictedinteraction prediction | FSW = 0.0169
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G34970 | Predictedinteraction prediction | FSW = 0.1693
| Unknown | EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN |
AT5G39900 | Predictedinteraction prediction | FSW = 0.0181
| Unknown | GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR |
AT1G80460 | Predictedinteraction prediction | FSW = 0.0070
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT1G25420 | Predictedinteraction prediction | FSW = 0.0693
| Unknown | UNKNOWN PROTEIN |
AT1G33360 | Predictedinteraction prediction | FSW = 0.0301
| Unknown | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX PUTATIVE |
AT4G21800 | Predictedinteraction prediction | FSW = 0.0039
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G15930 | Predictedinteraction prediction | FSW = 0.0138
| Unknown | MICROTUBULE MOTOR |
AT1G25220 | Predictedinteraction prediction | FSW = 0.0151
| Unknown | ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) ANTHRANILATE SYNTHASE |
AT1G04170 | Predictedinteraction prediction | FSW = 0.0502
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454