AtPIN will be upgraded. Please send your suggestions here

AT5G48870 - ( SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA binding )

49 Proteins interacs with AT5G48870

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G31700	Predicted two hybrid interaction prediction	FSW = 0.0111	Class C: nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G22440	Predicted Affinity Capture-RNA	FSW = 0.0202	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT1G20960	Predicted Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2157	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G37930	Predicted two hybrid interaction prediction	FSW = 0.0252	Class C: nucleus	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) GLYCINE HYDROXYMETHYLTRANSFERASE/ POLY(U) BINDING
AT3G12780	Predicted Protein-RNA	FSW = 0.1132	Class C: nucleus	PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT2G27710	Predicted Affinity Capture-RNA	FSW = 0.0280	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT2G43810	Predicted interaction prediction two hybrid two hybrid two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Phylogenetic profile method Co-expression	FSW = 0.1670	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G23290	Predicted Affinity Capture-RNA	FSW = 0.0593	Class C: nucleus	RPL27AB STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G59810	Predicted two hybrid in vitro Affinity Capture-MS two hybrid Phylogenetic profile method Co-expression	FSW = 0.3700	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G03870	Predicted interaction prediction two hybrid two hybrid two hybrid two hybrid two hybrid two hybrid Affinity Capture-MS Colocalization interologs mapping in vitro Co-expression	FSW = 0.2451	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30220	Predicted two hybrid two hybrid two hybrid Phylogenetic profile method Co-expression	FSW = 0.2718	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT3G14080	Predicted Affinity Capture-MS in vitro	FSW = 0.1226	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G19120	Predicted interaction prediction two hybrid two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification interologs mapping in vitro Co-expression	FSW = 0.2795	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G62840	Predicted two hybrid	FSW = 0.1299	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LIKE-SM RIBONUCLEOPROTEIN CORE (INTERPROIPR001163) LIKE-SM RIBONUCLEOPROTEIN EUKARYOTIC AND ARCHAEA-TYPE CORE (INTERPROIPR006649) LIKE-SM RIBONUCLEOPROTEIN-RELATED CORE (INTERPROIPR010920) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE (TAIRAT2G476404) HAS 535 BLAST HITS TO 535 PROTEINS IN 164 SPECIES ARCHAE - 2 BACTERIA - 0 METAZOA - 239 FUNGI - 109 PLANTS - 78 VIRUSES - 0 OTHER EUKARYOTES - 107 (SOURCE NCBI BLINK)
AT5G27720	Predicted interaction prediction two hybrid two hybrid in vitro Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Co-expression	FSW = 0.2118	Class C: nucleus	EMB1644 (EMBRYO DEFECTIVE 1644)
AT2G23930	Predicted Affinity Capture-MS Co-expression	FSW = 0.1630	Class C: nucleus	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT1G21190	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS in vitro two hybrid Co-expression	FSW = 0.2990	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G76860	Predicted interaction prediction in vitro Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid two hybrid interologs mapping Co-expression	FSW = 0.4636	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30330	Predicted two hybrid Affinity Capture-MS	FSW = 0.3074	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G03330	Predicted interaction prediction two hybrid two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Co-expression	FSW = 0.3623	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G65700	Predicted in vitro Co-expression	FSW = 0.1277	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G47640	Predicted two hybrid two hybrid Affinity Capture-MS two hybrid interaction prediction Co-expression	FSW = 0.2020	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT2G41500	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2597	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT1G28060	Predicted Affinity Capture-MS	FSW = 0.2508	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G20580	Predicted interaction prediction Co-expression	FSW = 0.2364	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G14300	Predicted two hybrid	FSW = 0.0140	Class C: nucleus	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE
AT4G17300	Predicted two hybrid	FSW = 0.0912	Unknown	NS1 ASPARAGINE-TRNA LIGASE
AT2G19870	Predicted two hybrid interaction prediction	FSW = 0.0154	Unknown	TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN
AT1G80070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1920	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT2G47000	Predicted two hybrid interaction prediction	FSW = 0.0304	Unknown	ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE
AT1G70600	Predicted Affinity Capture-RNA	FSW = 0.0425	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G02520	Predicted two hybrid	FSW = 0.0439	Unknown	PGP11 (P-GLYCOPROTEIN 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G26780	Predicted two hybrid	FSW = 0.0295	Unknown	SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING
AT1G70980	Predicted two hybrid	FSW = 0.0988	Unknown	SYNC3 ATP BINDING / AMINOACYL-TRNA LIGASE/ ASPARAGINE-TRNA LIGASE/ ASPARTATE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G56340	Predicted two hybrid	FSW = 0.0085	Unknown	40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT3G46210	Predicted two hybrid Affinity Capture-MS Co-expression	FSW = 0.0429	Unknown	3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN
AT1G04170	Predicted interaction prediction two hybrid	FSW = 0.0429	Unknown	EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G29940	Predicted two hybrid interaction prediction Co-expression	FSW = 0.0110	Unknown	NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G53880	Predicted two hybrid	FSW = 0.0252	Unknown	GTP BINDING / TRANSLATION INITIATION FACTOR
AT4G03430	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1575	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G08960	Predicted two hybrid interaction prediction	FSW = 0.0243	Unknown	PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN
AT5G38890	Predicted Synthetic Rescue	FSW = 0.0226	Unknown	EXORIBONUCLEASE-RELATED
AT2G32170	Predicted Affinity Capture-MS	FSW = 0.0847	Unknown	LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321603) HAS 362 BLAST HITS TO 319 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 132 FUNGI - 130 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 75 (SOURCE NCBI BLINK)
AT4G32720	Predicted Synthetic Lethality	FSW = 0.0478	Unknown	ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT5G41770	Predicted Affinity Capture-MS	FSW = 0.1166	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT2G32160	Predicted Affinity Capture-MS	FSW = 0.0113	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK)
AT5G15770	Predicted interaction prediction interologs mapping	FSW = 0.1051	Unknown	ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
AT1G79880	Predicted Synthetic Lethality	FSW = 0.0727	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT1G72340	Predicted interaction prediction	FSW = 0.0194	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G48870 - ( SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA binding )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Downloads

Fasta sequences:

Quick help

FSW

C3

PEP

How to cite