Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G14080 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )
27 Proteins interacs with AT3G14080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G59810 | PredictedAffinity Capture-MSin vitro | FSW = 0.2435
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G19120 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1434
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G27720 | PredictedAffinity Capture-MSin vitro | FSW = 0.0543
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G03330 | Predictedtwo hybrid | FSW = 0.0875
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT1G21190 | Predictedin vitroAffinity Capture-MS | FSW = 0.1205
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G76860 | Predictedin vitroAffinity Capture-MS | FSW = 0.1616
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G48870 | PredictedAffinity Capture-MSin vitro | FSW = 0.1226
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT5G56000 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0215
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT4G08870 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | ARGINASE PUTATIVE |
AT5G52640 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0042
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G43670 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1318
| Unknown | FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE |
AT5G56680 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0290
| Unknown | SYNC1 ATP BINDING / AMINOACYL-TRNA LIGASE/ ASPARAGINE-TRNA LIGASE/ ASPARTATE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G05170 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0200
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT2G29540 | Predictedtwo hybrid | FSW = 0.0085
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0040
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G26340 | Predictedtwo hybridtwo hybrid | FSW = 0.0645
| Unknown | 20S PROTEASOME BETA SUBUNIT E PUTATIVE |
AT1G60080 | Predictedtwo hybrid | FSW = 0.1667
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT1G79870 | Predictedtwo hybrid | FSW = 0.1290
| Unknown | OXIDOREDUCTASE FAMILY PROTEIN |
AT2G31725 | PredictedAffinity Capture-MS | FSW = 0.0968
| Unknown | UNKNOWN PROTEIN |
AT2G39260 | Predictedtwo hybrid | FSW = 0.0342
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT2G43720 | PredictedAffinity Capture-MS | FSW = 0.1056
| Unknown | UNKNOWN PROTEIN |
AT3G60150 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0269
| Unknown | UNKNOWN PROTEIN |
AT4G27490 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT1G61010 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0864
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT4G27960 | PredictedPhenotypic Suppression | FSW = 0.0204
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT5G09390 | Predictedinterologs mappingAffinity Capture-Western | FSW = 0.0516
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G66630 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1595
| Unknown | DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454