Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G08870 - ( arginase putative )
26 Proteins interacs with AT4G08870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | Predictedinteraction prediction | FSW = 0.0159
| Class C:plastidmitochondrion | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT3G63130 | Predictedinteraction prediction | FSW = 0.0293
| Class C:plastid | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT5G09650 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0308
| Class C:plastid | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT4G08900 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0920
| Class C:plastid | ARGINASE |
AT5G53480 | Predictedinteraction predictiontwo hybrid | FSW = 0.0398
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
AT1G53240 | PredictedAffinity Capture-MS | FSW = 0.0429
| Class C:mitochondrion | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL |
AT3G62870 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0059
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G16130 | Predictedtwo hybrid | FSW = 0.0325
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7C) |
AT1G09620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0368
| Unknown | ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G36380 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT5G54840 | Predictedinteraction predictioninterologs mapping | FSW = 0.0109
| Unknown | SGP1 GTP BINDING |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | CHC1 |
AT3G21700 | Predictedtwo hybrid | FSW = 0.0265
| Unknown | SGP2 GTP BINDING |
AT1G72050 | Predictedtwo hybrid | FSW = 0.0158
| Unknown | TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G14080 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0158
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT3G54350 | Predictedtwo hybrid | FSW = 0.0178
| Unknown | EMB1967 (EMBRYO DEFECTIVE 1967) |
AT2G47350 | Predictedtwo hybrid | FSW = 0.0325
| Unknown | PAPA-1-LIKE FAMILY PROTEIN / ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT3G10070 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G44720 | Predictedtwo hybrid | FSW = 0.0315
| Unknown | MOLYBDENUM COFACTOR SULFURASE FAMILY PROTEIN |
AT5G67540 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT5G66150 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | GLYCOSYL HYDROLASE FAMILY 38 PROTEIN |
AT3G06000 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT3G24090 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0088
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454