Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72050 - ( TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S rDNA binding / 5S rRNA binding / nucleic acid binding / transcription factor/ zinc ion binding )
32 Proteins interacs with AT1G72050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G43530 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT3G13920 | PredictedGene fusion method | FSW = 0.0119
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G54270 | PredictedGene fusion method | FSW = 0.0182
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G41100 | PredictedGene fusion methodCo-expression | FSW = 0.2838
| Unknown | TCH3 (TOUCH 3) CALCIUM ION BINDING |
AT5G42130 | PredictedGene fusion method | FSW = 0.0556
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT4G08870 | Predictedtwo hybrid | FSW = 0.0158
| Unknown | ARGINASE PUTATIVE |
AT1G04420 | PredictedGene fusion method | FSW = 0.0262
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.0214
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT1G33320 | PredictedGene fusion method | FSW = 0.0250
| Unknown | CYSTATHIONINE GAMMA-SYNTHASE CHLOROPLAST PUTATIVE / O-SUCCINYLHOMOSERINE (THIOL)-LYASE PUTATIVE |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0045
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT2G28930 | PredictedGene fusion method | FSW = 0.1000
| Unknown | APK1B ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G36680 | PredictedGene fusion method | FSW = 0.1429
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G47720 | PredictedGene fusion method | FSW = 0.0251
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT1G09020 | PredictedPhenotypic Enhancement | FSW = 0.0152
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.0269
| Unknown | SGA2 |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0083
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G01090 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.0194
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT2G25240 | PredictedGene fusion method | FSW = 0.1111
| Unknown | SERINE-TYPE ENDOPEPTIDASE INHIBITOR |
AT3G04940 | PredictedGene fusion method | FSW = 0.0416
| Unknown | CYSD1 (CYSTEINE SYNTHASE D1) CYSTEINE SYNTHASE |
AT5G09230 | PredictedGene fusion method | FSW = 0.0131
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT1G20500 | PredictedGene fusion method | FSW = 0.0239
| Unknown | 4-COUMARATE-COA LIGASE |
AT1G26970 | PredictedGene fusion method | FSW = 0.0504
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G24740 | PredictedGene fusion method | FSW = 0.0313
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
AT2G31350 | PredictedGene fusion method | FSW = 0.0909
| Unknown | GLX2-5 (GLYOXALASE 2-5) HYDROXYACYLGLUTATHIONE HYDROLASE/ IRON ION BINDING / ZINC ION BINDING |
AT2G30980 | PredictedGene fusion method | FSW = 0.0158
| Unknown | ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G10260 | PredictedGene fusion method | FSW = 0.0833
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT1G71330 | PredictedGene fusion method | FSW = 0.0504
| Unknown | ATNAP5 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / TRANSPORTER |
AT5G27840 | PredictedGene fusion method | FSW = 0.0526
| Unknown | TOPP8 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G03770 | PredictedGene fusion method | FSW = 0.0653
| Unknown | SULFOTRANSFERASE FAMILY PROTEIN |
AT1G09400 | PredictedGene fusion method | FSW = 0.0256
| Unknown | 12-OXOPHYTODIENOATE REDUCTASE PUTATIVE |
AT4G31170 | PredictedGene fusion method | FSW = 0.0571
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454