Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13920 - ( EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-dependent helicase/ translation initiation factor )
80 Proteins interacs with AT3G13920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0110
| Class A:nucleusClass B:vacuoleplasma membraneperoxisomecytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G48750 | ExperimentalAffinity Capture-Western | FSW = 0.0225
| Class A:nucleusClass B:plasma membranecytosolClass D:cytosol (p = 0.67) | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G72730 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1886
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G71860 | PredictedAffinity Capture-MS | FSW = 0.0157
| Class C:nucleus | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT5G22220 | PredictedPhenotypic Suppression | FSW = 0.0281
| Class C:nucleus | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G54840 | PredictedAffinity Capture-MS | FSW = 0.0146
| Class C:nucleus | SGP1 GTP BINDING |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0218
| Class C:nucleus | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0255
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT3G19760 | PredictedAffinity Capture-MSEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1998
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE |
AT5G11170 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1892
| Class C:nucleus | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G03415 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0352
| Class C:nucleus | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
AT1G72050 | PredictedGene fusion method | FSW = 0.0119
| Class C:nucleus | TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G02470 | PredictedPhenotypic Suppression | FSW = 0.0314
| Class C:nucleus | DPA TRANSCRIPTION FACTOR |
AT2G18760 | PredictedAffinity Capture-MS | FSW = 0.0159
| Class C:nucleus | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G34720 | PredictedAffinity Capture-MS | FSW = 0.0323
| Class C:nucleus | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT4G18040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0610
| Class C:nucleus | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT2G07687 | Predictedinterologs mapping | FSW = 0.0357
| Class C:nucleus | CYTOCHROME C OXIDASE SUBUNIT 3 |
AT5G60640 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT1G54270 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2680
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G01100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0314
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A) |
AT2G01690 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0048
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G55400 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT5G57870 | PredictedAffinity Capture-MS | FSW = 0.0502
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT1G35420 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0488
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G64740 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | CESA6 (CELLULOSE SYNTHASE 6) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G01630 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G25754 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | UNKNOWN PROTEIN |
AT1G26630 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | FBR12 (FUMONISIN B1-RESISTANT12) TRANSLATION INITIATION FACTOR |
AT3G18524 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | ATGCN1 TRANSPORTER |
AT4G11420 | PredictedAffinity Capture-MS | FSW = 0.0856
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT3G53110 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1253
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT1G65040 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G18070 | Predictedtwo hybridtwo hybrid | FSW = 0.0120
| Unknown | DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) INTRAMOLECULAR TRANSFERASE PHOSPHOTRANSFERASES / MAGNESIUM ION BINDING |
AT2G31970 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G05210 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT2G16950 | Predictedtwo hybrid | FSW = 0.0119
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT3G19420 | PredictedPhenotypic Suppression | FSW = 0.0175
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT5G39400 | PredictedPhenotypic Suppression | FSW = 0.0221
| Unknown | PTEN1 PHOSPHATASE |
AT5G47480 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | UNKNOWN PROTEIN |
AT1G10840 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | TIF3H1 TRANSLATION INITIATION FACTOR |
AT2G39260 | Predictedtwo hybrid | FSW = 0.0058
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT4G33250 | PredictedAffinity Capture-MS | FSW = 0.0788
| Unknown | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) TRANSLATION INITIATION FACTOR |
AT4G34110 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G15610 | PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | PROTEASOME FAMILY PROTEIN |
AT5G44320 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | H2AXA DNA BINDING |
AT1G21170 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | SEC5B |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0078
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT1G10580 | PredictedPhenotypic Suppression | FSW = 0.0228
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G16280 | PredictedAffinity Capture-MSEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0721
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G17130 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G78580 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G27970 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G12670 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT3G13970 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT3G14090 | Predictedinterologs mapping | FSW = 0.0260
| Unknown | ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING |
AT3G60240 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0454
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G16970 | PredictedSynthetic Lethality | FSW = 0.0271
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G39520 | PredictedAffinity Capture-MS | FSW = 0.0396
| Unknown | GTP-BINDING PROTEIN PUTATIVE |
AT5G62030 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN |
AT5G66640 | Predictedbiochemical | FSW = 0.0021
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT4G00660 | PredictedAffinity Capture-MS | FSW = 0.0733
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G27640 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G14520 | PredictedAffinity Capture-MS | FSW = 0.0019
| Unknown | PESCADILLO-RELATED |
AT5G20270 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1) RECEPTOR |
AT5G56060 | Predictedtwo hybrid | FSW = 0.0123
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT5G64550 | Predictedtwo hybrid | FSW = 0.0069
| Unknown | LORICRIN-RELATED |
AT5G60990 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1547
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH10) |
AT1G51380 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2192
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G02065 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.2192
| Unknown | DEAD/DEAH BOX HELICASE FAMILY PROTEIN |
AT5G11200 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1498
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G27000 | PredictedGene fusion method | FSW = 0.0268
| Unknown | ATRBP45C RNA BINDING |
AT4G29240 | PredictedGene fusion method | FSW = 0.0286
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454