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AT2G31970 - ( RAD50 ATP binding / nuclease/ zinc ion binding )

142 Proteins interacs with AT2G31970

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G78900	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0239	Unknown	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G04120	Predicted Affinity Capture-MS	FSW = 0.0095	Unknown	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G56070	Predicted Affinity Capture-MS	FSW = 0.0132	Unknown	LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT1G61000	Predicted two hybrid interaction prediction	FSW = 0.0293	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK)
AT3G58730	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0290	Unknown	VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT2G06510	Predicted Phenotypic Enhancement Phenotypic Enhancement Co-expression	FSW = 0.1212	Unknown	RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT1G16030	Predicted Affinity Capture-MS	FSW = 0.0086	Unknown	HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT5G43530	Predicted synthetic growth defect Synthetic Lethality interaction prediction	FSW = 0.2699	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT5G14590	Predicted Affinity Capture-MS	FSW = 0.0137	Unknown	ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT2G28190	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1864	Unknown	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G11630	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1540	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G29320	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0130	Unknown	GLUCAN PHOSPHORYLASE PUTATIVE
AT3G54670	Predicted two hybrid interaction prediction Enriched domain pair Co-expression	FSW = 0.0338	Unknown	TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT3G48190	Predicted Co-purification	FSW = 0.1093	Unknown	ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE
AT5G63110	Predicted Phenotypic Enhancement	FSW = 0.1280	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G12520	Predicted Synthetic Lethality synthetic growth defect interaction prediction	FSW = 0.2669	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT1G54340	Predicted Affinity Capture-MS	FSW = 0.0176	Unknown	ICDH (ISOCITRATE DEHYDROGENASE) ISOCITRATE DEHYDROGENASE (NADP+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G07670	Predicted synthetic growth defect	FSW = 0.0454	Unknown	CALCIUM-TRANSPORTING ATPASE
AT1G22300	Predicted Phenotypic Enhancement Affinity Capture-MS	FSW = 0.0020	Unknown	GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G18524	Predicted Co-purification	FSW = 0.2016	Unknown	MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT5G19990	Predicted Affinity Capture-MS	FSW = 0.0258	Unknown	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G25070	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0211	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G16970	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.1236	Unknown	KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT5G03860	Predicted Synthetic Lethality interaction prediction	FSW = 0.0069	Unknown	MLS (MALATE SYNTHASE) MALATE SYNTHASE
AT1G08130	Predicted Synthetic Lethality	FSW = 0.1111	Unknown	ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP)
AT1G48050	Predicted Synthetic Rescue	FSW = 0.0372	Unknown	KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT4G26720	Predicted Synthetic Lethality	FSW = 0.1045	Unknown	PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G67270	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement interaction prediction Co-expression	FSW = 0.1873	Unknown	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT4G02070	Predicted Co-purification	FSW = 0.1537	Unknown	MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING
AT1G21690	Predicted Synthetic Lethality Co-expression	FSW = 0.0561	Unknown	EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G75230	Predicted Phenotypic Enhancement	FSW = 0.0581	Unknown	HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT2G43810	Predicted synthetic growth defect	FSW = 0.1300	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G17590	Predicted Phenotypic Suppression	FSW = 0.0229	Unknown	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT5G64630	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1296	Unknown	FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120	Predicted synthetic growth defect	FSW = 0.1509	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870	Predicted synthetic growth defect	FSW = 0.1476	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G03190	Predicted Synthetic Lethality Co-expression	FSW = 0.1131	Unknown	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G12860	Predicted Affinity Capture-MS	FSW = 0.0118	Unknown	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G13920	Predicted Affinity Capture-MS	FSW = 0.0051	Unknown	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT1G56110	Predicted Affinity Capture-MS Co-expression	FSW = 0.0189	Unknown	NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT5G22750	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.2643	Unknown	RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G26150	Predicted synthetic growth defect	FSW = 0.1032	Unknown	ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT1G21700	Predicted Phenotypic Suppression	FSW = 0.0385	Unknown	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT1G07370	Predicted Synthetic Lethality Phenotypic Enhancement Co-expression	FSW = 0.3099	Unknown	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G65470	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement interaction prediction	FSW = 0.1793	Unknown	FAS1 (FASCIATA 1) HISTONE BINDING
AT3G20010	Predicted Phenotypic Enhancement	FSW = 0.0254	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G38560	Predicted Phenotypic Enhancement	FSW = 0.1061	Unknown	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT3G19210	Predicted Phenotypic Suppression	FSW = 0.4769	Unknown	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G60410	Predicted Phenotypic Suppression	FSW = 0.0372	Unknown	SIZ1 DNA BINDING / SUMO LIGASE
AT2G44950	Predicted synthetic growth defect Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.2395	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G15870	Predicted Affinity Capture-MS Co-expression	FSW = 0.0082	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT1G35940	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect Synthetic Lethality	FSW = 0.2601	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT5G02050	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0112	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT1G10130	Predicted synthetic growth defect	FSW = 0.0421	Unknown	ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G47690	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1455	Unknown	ATEB1A MICROTUBULE BINDING
AT5G41150	Predicted Phenotypic Enhancement	FSW = 0.2669	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT5G05490	Predicted Phenotypic Enhancement	FSW = 0.0257	Unknown	SYN1 (SYNAPTIC 1)
AT5G66130	Predicted Phenotypic Suppression	FSW = 0.2833	Unknown	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT3G28730	Predicted Synthetic Lethality Co-expression	FSW = 0.0324	Unknown	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT5G19910	Predicted synthetic growth defect	FSW = 0.1378	Unknown	SOH1 FAMILY PROTEIN
AT5G63960	Predicted Synthetic Lethality Phenotypic Enhancement Co-expression	FSW = 0.1366	Unknown	EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G58290	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0498	Unknown	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G54260	Predicted two hybrid two hybrid two hybrid two hybrid two hybrid two hybrid Synthetic Rescue Synthetic Lethality Reconstituted Complex Phenotypic Suppression Co-purification Colocalization Colocalization co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Co-purification Colocalization two hybrid Affinity Capture-Western two hybrid Affinity Capture-Western Co-purification in vitro in vivo two hybrid in vivo in vitro Co-purification Affinity Capture-Western co-fractionation Co-fractionation Synthetic Rescue Synthetic Lethality Affinity Capture-MS Reconstituted Complex Phenotypic Suppression interologs mapping interaction prediction	FSW = 0.6582	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G40820	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.2086	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT5G20850	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.4144	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G08830	Predicted Synthetic Lethality	FSW = 0.1722	Unknown	CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT1G10930	Predicted Synthetic Rescue Synthetic Lethality synthetic growth defect synthetic growth defect synthetic growth defect Co-purification interaction prediction	FSW = 0.3655	Unknown	RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G02680	Predicted two hybrid two hybrid in vitro in vitro in vivo in vivo in vivo in vitro two hybrid Co-purification Affinity Capture-Western	FSW = 0.1310	Unknown	NBS1 (NIJMEGEN BREAKAGE SYNDROME 1)
AT3G47700	Predicted in vitro two hybrid	FSW = 0.0072	Unknown	MAG2 (MAIGO2)
AT4G27230	Predicted Colocalization	FSW = 0.0375	Unknown	HTA2 (HISTONE H2A) DNA BINDING
AT5G02560	Predicted Colocalization	FSW = 0.0144	Unknown	HTA12 DNA BINDING
AT3G05740	Predicted Co-purification	FSW = 0.1642	Unknown	RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT4G09140	Predicted Co-purification	FSW = 0.1583	Unknown	MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT5G22010	Predicted Co-purification	FSW = 0.1464	Unknown	ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G04020	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.3720	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730	Predicted interaction prediction Synthetic Lethality synthetic growth defect Co-expression	FSW = 0.3769	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G10580	Predicted Phenotypic Enhancement	FSW = 0.0050	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G18090	Predicted interologs mapping interologs mapping interologs mapping Phenotypic Enhancement	FSW = 0.1491	Unknown	EXONUCLEASE PUTATIVE
AT1G24290	Predicted Phenotypic Enhancement	FSW = 0.1338	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G49980	Predicted Phenotypic Enhancement	FSW = 0.0929	Unknown	DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING
AT1G51710	Predicted Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1581	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G60490	Predicted synthetic growth defect	FSW = 0.1389	Unknown	ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G66740	Predicted Synthetic Lethality synthetic growth defect interaction prediction	FSW = 0.3607	Unknown	SGA2
AT1G67190	Predicted Synthetic Lethality	FSW = 0.2358	Unknown	F-BOX FAMILY PROTEIN
AT1G67500	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1607	Unknown	ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G79990	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0076	Unknown	LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT1G80410	Predicted synthetic growth defect	FSW = 0.2163	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760	Predicted synthetic growth defect	FSW = 0.2578	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G25100	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0530	Unknown	RIBONUCLEASE HII FAMILY PROTEIN
AT2G26970	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0061	Unknown	EXONUCLEASE FAMILY PROTEIN
AT1G07270	Predicted Synthetic Lethality	FSW = 0.0509	Unknown	CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT1G08840	Predicted Synthetic Lethality	FSW = 0.2500	Unknown	EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G54390	Predicted Phenotypic Enhancement	FSW = 0.0994	Unknown	PHD FINGER PROTEIN-RELATED
AT2G44580	Predicted interaction prediction Synthetic Lethality synthetic growth defect	FSW = 0.3136	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G02820	Predicted synthetic growth defect	FSW = 0.2690	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G06910	Predicted Synthetic Lethality Synthetic Lethality Co-expression	FSW = 0.0747	Unknown	ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE
AT3G13170	Predicted Phenotypic Enhancement Phenotypic Suppression	FSW = 0.0439	Unknown	ATSPO11-1 ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ CATALYTIC
AT3G42660	Predicted interaction prediction Synthetic Lethality synthetic growth defect Co-expression	FSW = 0.4151	Unknown	NUCLEOTIDE BINDING
AT3G58560	Predicted Synthetic Lethality	FSW = 0.1976	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G25120	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect synthetic growth defect interaction prediction Co-expression	FSW = 0.3445	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G38630	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1268	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09740	Predicted synthetic growth defect	FSW = 0.1528	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10960	Predicted Synthetic Lethality	FSW = 0.2039	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780	Predicted synthetic growth defect	FSW = 0.2223	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G16850	Predicted Synthetic Rescue	FSW = 0.0565	Unknown	ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE
AT5G26680	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.3993	Unknown	ENDONUCLEASE PUTATIVE
AT5G35980	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0220	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT5G50320	Predicted Phenotypic Suppression	FSW = 0.0732	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G53770	Predicted synthetic growth defect	FSW = 0.1138	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G55310	Predicted Synthetic Lethality	FSW = 0.1222	Unknown	TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G63920	Predicted synthetic growth defect Co-expression	FSW = 0.2599	Unknown	DNA TOPOISOMERASE III ALPHA PUTATIVE
AT3G06670	Predicted Phenotypic Enhancement	FSW = 0.0698	Unknown	BINDING
AT3G11270	Predicted Affinity Capture-MS	FSW = 0.0602	Unknown	MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G12400	Predicted synthetic growth defect	FSW = 0.1651	Unknown	ELC UBIQUITIN BINDING
AT3G13440	Predicted synthetic growth defect	FSW = 0.0506	Unknown	METHYLTRANSFERASE/ NUCLEIC ACID BINDING
AT3G18860	Predicted Phenotypic Enhancement	FSW = 0.1658	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G21060	Predicted Synthetic Lethality interaction prediction	FSW = 0.0928	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G25100	Predicted Synthetic Lethality Co-expression	FSW = 0.1076	Unknown	CDC45 (CELL DIVISION CYCLE 45)
AT4G04210	Predicted Phenotypic Suppression	FSW = 0.0510	Unknown	PUX4 PROTEIN BINDING
AT4G08500	Predicted Synthetic Lethality	FSW = 0.0232	Unknown	MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT4G11920	Predicted synthetic growth defect	FSW = 0.1397	Unknown	CCS52A2 SIGNAL TRANSDUCER
AT4G29380	Predicted synthetic growth defect	FSW = 0.1149	Unknown	PROTEIN KINASE FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G30870	Predicted synthetic growth defect	FSW = 0.2109	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G10270	Predicted Synthetic Lethality	FSW = 0.1665	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G23540	Predicted Affinity Capture-MS	FSW = 0.0249	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G27970	Predicted synthetic growth defect	FSW = 0.1648	Unknown	BINDING
AT5G41700	Predicted Phenotypic Enhancement	FSW = 0.0862	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G44750	Predicted synthetic growth defect	FSW = 0.0420	Unknown	REV1 DNA-DIRECTED DNA POLYMERASE
AT1G29630	Predicted Phenotypic Enhancement interologs mapping interologs mapping Phenotypic Enhancement interologs mapping	FSW = 0.0793	Unknown	NUCLEASE
AT5G02820	Predicted Phenotypic Suppression Phenotypic Enhancement Phenotypic Suppression Phenotypic Enhancement	FSW = 0.0484	Unknown	RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING
AT1G52360	Predicted Affinity Capture-MS	FSW = 0.0086	Unknown	COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G19480	Predicted Phenotypic Enhancement	FSW = 0.0503	Unknown	HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT3G07120	Predicted synthetic growth defect	FSW = 0.1823	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G55255	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1773	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G40490	Predicted synthetic growth defect Co-expression	FSW = 0.1255	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G23420	Predicted synthetic growth defect	FSW = 0.1593	Unknown	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G14400	Predicted synthetic growth defect	FSW = 0.2342	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G49660	Predicted synthetic growth defect Synthetic Lethality interaction prediction	FSW = 0.0594	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G55300	Predicted interaction prediction Synthetic Lethality Co-expression	FSW = 0.1055	Unknown	TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I
AT1G09000	Predicted Synthetic Lethality	FSW = 0.0322	Unknown	ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE
AT1G15920	Predicted Synthetic Lethality	FSW = 0.2107	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G54960	Predicted interaction prediction	FSW = 0.0074	Unknown	ANP2 MAP KINASE KINASE KINASE/ KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G31970 - ( RAD50 ATP binding / nuclease/ zinc ion binding )

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