Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24290 - ( AAA-type ATPase family protein )
36 Proteins interacs with AT1G24290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G06510 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1006
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT4G01370 | PredictedPhenotypic Enhancement | FSW = 0.0150
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT5G43530 | Predictedsynthetic growth defectsynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.1488
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT3G12110 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G12480 | Predictedbiochemical | FSW = 0.0090
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G41580 | PredictedSynthetic Rescue | FSW = 0.2725
| Unknown | ZINC ION BINDING |
AT3G21700 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | SGP2 GTP BINDING |
AT5G54840 | Predictedtwo hybridinteraction prediction | FSW = 0.0082
| Unknown | SGP1 GTP BINDING |
AT5G22750 | Predictedsynthetic growth defect | FSW = 0.1073
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G07370 | Predictedinterologs mappingSynthetic RescueSynthetic Lethality | FSW = 0.1487
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT5G18070 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Unknown | DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) INTRAMOLECULAR TRANSFERASE PHOSPHOTRANSFERASES / MAGNESIUM ION BINDING |
AT2G31970 | PredictedPhenotypic Enhancement | FSW = 0.1338
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT3G25980 | Predictedtwo hybridinteraction prediction | FSW = 0.0295
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G40820 | Predictedinterologs mapping | FSW = 0.1192
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G63960 | PredictedSynthetic Rescueinterologs mappingPhenotypic Enhancement | FSW = 0.1321
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G42120 | Predictedinterologs mappingsynthetic growth defectAffinity Capture-Westerninterologs mappingSynthetic Rescue | FSW = 0.1091
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT5G20850 | PredictedDosage Growth Defectinterologs mapping | FSW = 0.1194
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G23590 | Predictedin vitro | FSW = 0.0566
| Unknown | RFR1 (REF4-RELATED 1) |
AT5G27680 | Predictedin vitro | FSW = 0.0515
| Unknown | RECQSIM (ARABIDOPSIS RECQ HELICASE SIM) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G04020 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.1486
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G10930 | PredictedSynthetic Lethalitysynthetic growth defectsynthetic growth defectPhenotypic EnhancementPhenotypic Enhancementinteraction prediction | FSW = 0.1558
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G08840 | Predictedinterologs mapping | FSW = 0.2351
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G67500 | PredictedSynthetic Lethality | FSW = 0.1866
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G02760 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0932
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G01090 | Predictedtwo hybridinteraction prediction | FSW = 0.0198
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G27740 | Predictedinterologs mapping | FSW = 0.0507
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.1669
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G54200 | Predictedtwo hybrid | FSW = 0.0149
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G59440 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0496
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT4G25120 | PredictedSynthetic Rescue | FSW = 0.1766
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0335
| Unknown | BINDING |
AT5G63670 | PredictedPhenotypic Enhancement | FSW = 0.0220
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G63920 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1330
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT1G14400 | Predictedsynthetic growth defectEnriched domain pairCo-expression | FSW = 0.0476
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G64610 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454