Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48120 - ( binding )
65 Proteins interacs with AT5G48120Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0593
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G08670 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT1G78900 | PredictedAffinity Capture-MS | FSW = 0.0721
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0642
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G19740 | PredictedPhenotypic Enhancement | FSW = 0.1119
| Unknown | PEPTIDASE M28 FAMILY PROTEIN |
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0839
| Unknown | BINDING |
AT3G22110 | PredictedPhenotypic Suppression | FSW = 0.0908
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G12780 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0391
| Unknown | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT5G59690 | PredictedPhenotypic Enhancement | FSW = 0.0799
| Unknown | HISTONE H4 |
AT1G56190 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.1241
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT2G45300 | PredictedPhenotypic Suppression | FSW = 0.0446
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G73820 | PredictedPhenotypic Enhancement | FSW = 0.0665
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.0951
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0323
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | PYRUVATE KINASE PUTATIVE |
AT1G16970 | PredictedPhenotypic Enhancement | FSW = 0.0576
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0343
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.1448
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G64630 | PredictedPhenotypic Suppression | FSW = 0.0389
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G03190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.1095
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.1695
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.2028
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G06210 | PredictedPhenotypic Enhancement | FSW = 0.0923
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT5G18620 | PredictedPhenotypic Enhancement | FSW = 0.0577
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT3G02580 | PredictedPhenotypic Enhancement | FSW = 0.0455
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT5G66130 | PredictedPhenotypic Enhancement | FSW = 0.0847
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G19910 | PredictedPhenotypic Enhancement | FSW = 0.1666
| Unknown | SOH1 FAMILY PROTEIN |
AT5G63960 | PredictedSynthetic Lethality | FSW = 0.0172
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G54260 | PredictedPhenotypic Enhancement | FSW = 0.0772
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G29150 | PredictedPhenotypic Suppression | FSW = 0.1010
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G32750 | PredictedPhenotypic Enhancement | FSW = 0.0686
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT1G34150 | PredictedPhenotypic Enhancement | FSW = 0.1921
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G79730 | PredictedPhenotypic Enhancement | FSW = 0.0739
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G19170 | PredictedAffinity Capture-MS | FSW = 0.0457
| Unknown | SLP3 SERINE-TYPE PEPTIDASE |
AT3G13330 | PredictedPhenotypic Enhancement | FSW = 0.0287
| Unknown | BINDING |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.1917
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT5G27740 | PredictedPhenotypic Enhancement | FSW = 0.0885
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G08780 | PredictedPhenotypic Suppression | FSW = 0.1739
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G24290 | PredictedPhenotypic Enhancement | FSW = 0.0335
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G29990 | PredictedPhenotypic Suppression | FSW = 0.2016
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1317
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G60620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0204
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G63160 | PredictedPhenotypic Enhancement | FSW = 0.1277
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G68310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0277
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT1G77470 | PredictedPhenotypic Enhancement | FSW = 0.0556
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
AT1G79890 | PredictedPhenotypic Enhancement | FSW = 0.1782
| Unknown | HELICASE-RELATED |
AT2G26060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0141
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
AT2G30410 | PredictedPhenotypic Enhancement | FSW = 0.1595
| Unknown | KIS (KIESEL) UNFOLDED PROTEIN BINDING |
AT3G07300 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0053
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT3G13970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0497
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT3G20800 | PredictedPhenotypic Enhancement | FSW = 0.1032
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT3G22590 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1186
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G27000 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0450
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G55380 | PredictedPhenotypic Enhancement | FSW = 0.0577
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.1267
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G13680 | PredictedPhenotypic Enhancement | FSW = 0.0524
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G14530 | PredictedPhenotypic Enhancement | FSW = 0.0385
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G23290 | PredictedPhenotypic Suppression | FSW = 0.1410
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.1390
| Unknown | GAS41 PROTEIN BINDING |
AT5G66100 | PredictedPhenotypic Enhancement | FSW = 0.1620
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT5G67320 | PredictedPhenotypic Enhancement | FSW = 0.1452
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT3G45630 | Predictedinteraction prediction | FSW = 0.0282
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454