Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07300 - ( eukaryotic translation initiation factor 2B family protein / eIF-2B family protein )

41 Proteins interacs with AT3G07300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G58730

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0495

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT5G50850

Predicted

two hybrid

two hybrid

FSW = 0.0089

Unknown

MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT2G01690

Predicted

two hybrid

interaction prediction

FSW = 0.0125

Unknown

BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0054

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G50200

Predicted

Affinity Capture-MS

FSW = 0.0727

Unknown

ALATS (ALANYL-TRNA SYNTHETASE) ATP BINDING / ALANINE-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G21110

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0727

Unknown

PUR7 (PURIN 7) PHOSPHORIBOSYLAMINOIMIDAZOLESUCCINOCARBOXAMIDE SYNTHASE
AT5G20920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3589

Unknown

EIF2 BETA TRANSLATION INITIATION FACTOR
AT5G19330

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0138

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT1G77840

Predicted

Reconstituted Complex

FSW = 0.0750

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT2G31660Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0216

Unknown

SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER
AT3G05060

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0078

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT2G40290

Predicted

synthetic growth defect

in vivo

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0848

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT1G72560

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0188

Unknown

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT3G61530

Predicted

interaction prediction

FSW = 0.0967

Unknown

PANB2 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT2G46110

Predicted

two hybrid

FSW = 0.0533

Unknown

KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT1G71270

Predicted

two hybrid

interaction prediction

FSW = 0.0059

Unknown

POK (POKY POLLEN TUBE)
AT4G16420

Predicted

interaction prediction

two hybrid

FSW = 0.0025

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT5G14800

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0130

Unknown

P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0013

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT5G27140

Predicted

two hybrid

FSW = 0.0473

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT5G38640

Predicted

interaction prediction

two hybrid

in vitro

in vivo

two hybrid

Affinity Capture-MS

in vivo

in vitro

interologs mapping

FSW = 0.2842

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT1G53880Predicted

two hybrid

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vitro

in vitro

FSW = 0.1691

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G72340

Predicted

in vitro

in vitro

interaction prediction

FSW = 0.1148

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT2G34970

Predicted

in vitro

Co-purification

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vitro

Affinity Capture-MS

Affinity Capture-Western

Co-purification

co-fractionation

Co-fractionation

interaction prediction

Co-expression

FSW = 0.3725

Unknown

EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN
AT4G18300

Predicted

in vitro

FSW = 0.1466

Unknown

EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN
AT5G05470

Predicted

in vivo

FSW = 0.1097

Unknown

EIF2 ALPHA RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G04170

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2059

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G29940Predicted

Affinity Capture-MS

FSW = 0.0221

Unknown

NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G48970

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3344

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G54290

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0330

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G31580

Predicted

two hybrid

FSW = 0.0303

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S TRNAHIS GUANYLYLTRANSFERASE (INTERPROIPR007537) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G323201) HAS 640 BLAST HITS TO 336 PROTEINS IN 155 SPECIES ARCHAE - 65 BACTERIA - 47 METAZOA - 212 FUNGI - 176 PLANTS - 43 VIRUSES - 2 OTHER EUKARYOTES - 95 (SOURCE NCBI BLINK)
AT1G05830

Predicted

two hybrid

FSW = 0.0069

Unknown

ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G25420

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1463

Unknown

UNKNOWN PROTEIN
AT3G59410

Predicted

Synthetic Rescue

Phenotypic Suppression

interologs mapping

FSW = 0.0351

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G39830

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0101

Unknown

L-ASCORBATE OXIDASE PUTATIVE
AT5G48120

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0053

Unknown

BINDING
AT5G13060

Predicted

Affinity Capture-MS

FSW = 0.0258

Unknown

ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING
AT2G19710

Predicted

Affinity Capture-MS

FSW = 0.1765

Unknown

UNKNOWN PROTEIN
AT1G36730

Predicted

Reconstituted Complex

FSW = 0.0769

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT3G07740

Predicted

two hybrid

two hybrid

FSW = 0.0195

Unknown

ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT5G28740

Predicted

two hybrid

interaction prediction

FSW = 0.0376

Unknown

TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454