Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G04170 - ( EIF2 GAMMA translation factor nucleic acid binding / translation initiation factor )
53 Proteins interacs with AT1G04170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01950 | Experimentalphage display | FSW = 0.0043
| Unknown | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT2G42740 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0475
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G47610 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0613
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G56070 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0090
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.0908
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.1925
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT3G07110 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0409
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AA) |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT4G34460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0083
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G37190 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0893
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.0601
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT3G11400 | Predictedco-fractionationCo-fractionationAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MSCo-expression | FSW = 0.1978
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT1G76810 | PredictedAffinity Capture-MS | FSW = 0.1552
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT5G20920 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2964
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT4G11420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1517
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT3G53430 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
AT1G77840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.2147
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT2G24490 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0030
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | SGP2 GTP BINDING |
AT5G54840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0057
| Unknown | SGP1 GTP BINDING |
AT2G40290 | Predictedinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1200
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT5G17690 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic Enhancementtwo hybrid | FSW = 0.0070
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT1G72560 | Predictedtwo hybrid | FSW = 0.0149
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT1G03330 | Predictedinteraction predictiontwo hybrid | FSW = 0.0181
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT5G48870 | Predictedinteraction predictiontwo hybrid | FSW = 0.0429
| Unknown | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT3G03600 | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G59990 | Predictedin vivoin vitroCo-expression | FSW = 0.0526
| Unknown | MAP2B (METHIONINE AMINOPEPTIDASE 2B) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.0558
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT5G05470 | Predictedtwo hybrid | FSW = 0.0613
| Unknown | EIF2 ALPHA RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G17130 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0058
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G48970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2338
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G53880 | PredictedPhenotypic SuppressionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0989
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G60620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0115
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G34970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.1773
| Unknown | EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN |
AT2G40570 | Predictedsynthetic growth defect | FSW = 0.0613
| Unknown | INITIATOR TRNA PHOSPHORIBOSYL TRANSFERASE FAMILY PROTEIN |
AT2G46280 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1105
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G07300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2059
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT3G13970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0058
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT3G56150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1922
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT3G56510 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
AT3G59410 | PredictedPhenotypic Suppression | FSW = 0.0283
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G29940 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0369
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.0459
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT4G05440 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0186
| Unknown | EDA35 (EMBRYO SAC DEVELOPMENT ARREST 35) |
AT3G22860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1558
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT1G36730 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1939
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT1G21160 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.1254
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT2G25355 | Predictedtwo hybridinteraction prediction | FSW = 0.0179
| Unknown | EXONUCLEASE-RELATED |
AT1G72340 | Predictedinteraction prediction | FSW = 0.0502
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT4G18330 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0849
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 PUTATIVE / EIF2S3 PUTATIVE / EIF-2-GAMMA PUTATIVE |
AT2G18720 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0789
| Unknown | GTP BINDING / GTPASE/ SERINE-TYPE PEPTIDASE/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454