Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G21160 - ( GTP binding / GTPase/ translation initiation factor )
31 Proteins interacs with AT1G21160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G31610 | PredictedAffinity Capture-MS | FSW = 0.0456
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0493
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G47610 | PredictedAffinity Capture-MS | FSW = 0.1093
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.0611
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.0438
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.1192
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G10350 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G25780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1145
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0466
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G06380 | PredictedAffinity Capture-MS | FSW = 0.2092
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0938
| Unknown | RNA BINDING |
AT2G37190 | PredictedAffinity Capture-MS | FSW = 0.1585
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT1G17750 | PredictedGene fusion method | FSW = 0.0250
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT5G60790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0821
| Unknown | ATGCN1 TRANSPORTER |
AT3G11400 | PredictedAffinity Capture-MS | FSW = 0.1391
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT4G25630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0685
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G72440 | PredictedAffinity Capture-MS | FSW = 0.1773
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G57150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1322
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT3G16810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1070
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT2G40700 | PredictedAffinity Capture-MS | FSW = 0.0872
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
AT1G04170 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.1254
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G19480 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT3G22860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1491
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT3G09100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0556
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT1G36730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2215
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT3G48960 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.1069
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT2G04520 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.0645
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 1A PUTATIVE / EIF-1A PUTATIVE / EIF-4C PUTATIVE |
AT1G10090 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454