Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29965 - ( 60S ribosomal protein L18A (RPL18aA) )
39 Proteins interacs with AT1G29965Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | HISTONE H4 |
AT2G34480 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.0323
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT1G06380 | PredictedAffinity Capture-MS | FSW = 0.2516
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G01610 | PredictedAffinity Capture-MS | FSW = 0.1636
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.1912
| Unknown | RNA BINDING |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | ATGCN1 TRANSPORTER |
AT2G40360 | PredictedAffinity Capture-MS | FSW = 0.2149
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.1954
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.2597
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G72440 | PredictedAffinity Capture-MS | FSW = 0.1678
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G23620 | PredictedAffinity Capture-MS | FSW = 0.1818
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16810 | PredictedAffinity Capture-MS | FSW = 0.2304
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.0694
| Unknown | ZINC ION BINDING |
AT2G24500 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | FZF TRANSCRIPTION FACTOR |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT3G55410 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT4G26910 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT4G17620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0131
| Unknown | GLYCINE-RICH PROTEIN |
AT1G10490 | PredictedAffinity Capture-MS | FSW = 0.0727
| Unknown | UNKNOWN PROTEIN |
AT3G14600 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.1010
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AC) |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.1282
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT4G14000 | Predictedtwo hybrid | FSW = 0.0066
| Unknown | UNKNOWN PROTEIN |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G56510 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
AT5G46840 | PredictedAffinity Capture-MS | FSW = 0.1653
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G10270 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT4G01560 | PredictedAffinity Capture-MS | FSW = 0.1731
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.0989
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G12990 | PredictedAffinity Capture-MS | FSW = 0.0289
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT3G09720 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G27170 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G18220 | PredictedAffinity Capture-MS | FSW = 0.2032
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G03820 | PredictedAffinity Capture-MS | FSW = 0.0463
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.0778
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G52930 | PredictedAffinity Capture-MS | FSW = 0.2998
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G29550 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G21160 | PredictedAffinity Capture-MS | FSW = 0.1069
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT1G16280 | PredictedAffinity Capture-MSGene neighbors method | FSW = 0.0460
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G13160 | PredictedAffinity Capture-MS | FSW = 0.0745
| Unknown | SDA1 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454