Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G71280 - ( DEAD/DEAH box helicase putative )
110 Proteins interacs with AT1G71280| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G32470
   | PredictedAffinity Capture-MS | FSW = 0.6039
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT3G25520
| PredictedAffinity Capture-MS | FSW = 0.0879
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G43170
| PredictedAffinity Capture-MS | FSW = 0.0592
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.4758
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT3G56190
| PredictedAffinity Capture-MS | FSW = 0.4203
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.5895
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5768
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.5847
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.5276
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.4744
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G15210
| PredictedAffinity Capture-MS | FSW = 0.6077
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.5426
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT2G31170
| PredictedAffinity Capture-MS | FSW = 0.1686
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.5607
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.3128
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT1G61520
| PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | LHCA3 CHLOROPHYLL BINDING |
| AT3G06040
| PredictedAffinity Capture-MS | FSW = 0.5610
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT1G06380
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1449
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT2G41670
| PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.4512
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.5091
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.5404
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.5027
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT2G39460
| PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G14120
| PredictedAffinity Capture-MS | FSW = 0.1476
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
| AT5G62300
| PredictedAffinity Capture-MS | FSW = 0.3719
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT5G43370
| PredictedAffinity Capture-MS | FSW = 0.6317
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G36860
| PredictedAffinity Capture-MS | FSW = 0.5938
| Unknown | ZINC ION BINDING |
| AT1G09640
| PredictedAffinity Capture-MS | FSW = 0.4983
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT2G35690
| PredictedAffinity Capture-MS | FSW = 0.4915
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT2G40360
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1249
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G44860
| PredictedAffinity Capture-MS | FSW = 0.0850
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.1130
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.1522
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2112
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G13445
| PredictedAffinity Capture-MS | FSW = 0.1561
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT5G59870
| PredictedAffinity Capture-MS | FSW = 0.6252
| Unknown | HTA6 DNA BINDING |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.5027
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT5G54840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0394
| Unknown | SGP1 GTP BINDING |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1501
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G07050
| PredictedAffinity Capture-MS | FSW = 0.1915
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT3G16810
| PredictedAffinity Capture-MS | FSW = 0.1548
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT2G37470
| PredictedAffinity Capture-MS | FSW = 0.4466
| Unknown | HISTONE H2B PUTATIVE |
| AT3G18600
| PredictedAffinity Capture-MSEnriched domain pair | FSW = 0.0982
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G15550
| PredictedAffinity Capture-MS | FSW = 0.1407
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G72480
| PredictedAffinity Capture-MS | FSW = 0.4474
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT2G13650
| PredictedAffinity Capture-MS | FSW = 0.5198
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.4229
| Unknown | BINDING |
| AT3G45280
| PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.6223
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.5135
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.6502
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.4924
| Unknown | PSF2 |
| AT5G47880
| PredictedAffinity Capture-MS | FSW = 0.5564
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
| AT1G24706
| PredictedAffinity Capture-MS | FSW = 0.2331
| Unknown | UNKNOWN PROTEIN |
| AT1G51770
| PredictedAffinity Capture-MS | FSW = 0.6187
| Unknown | UNKNOWN PROTEIN |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.6225
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G05650
| PredictedAffinity Capture-MS | FSW = 0.3463
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
| AT1G11530
| PredictedAffinity Capture-MS | FSW = 0.5097
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
| AT1G20696
| PredictedAffinity Capture-MS | FSW = 0.4994
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G33110
| PredictedAffinity Capture-MS | FSW = 0.5285
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.1741
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.3527
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.6077
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G76720
| PredictedAffinity Capture-MS | FSW = 0.6256
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT2G03410
| PredictedAffinity Capture-MS | FSW = 0.0684
| Unknown | MO25 FAMILY PROTEIN |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.1619
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT2G38600
| PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
| AT2G41530
| PredictedAffinity Capture-MS | FSW = 0.2126
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.4386
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G11900
| PredictedAffinity Capture-MS | FSW = 0.1152
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.6039
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.4525
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.4254
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.4499
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G30842
| PredictedAffinity Capture-MS | FSW = 0.4445
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G45590
| PredictedAffinity Capture-MS | FSW = 0.0489
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
| AT3G52390
| PredictedAffinity Capture-MS | FSW = 0.5173
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G53510
| PredictedAffinity Capture-MS | FSW = 0.3019
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
| AT4G17770
| PredictedAffinity Capture-MS | FSW = 0.6215
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.3485
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT5G06420
| PredictedAffinity Capture-MS | FSW = 0.1047
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G09390
| PredictedAffinity Capture-MS | FSW = 0.3908
| Unknown | CD2-BINDING PROTEIN-RELATED |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.5321
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G19660
| PredictedAffinity Capture-MS | FSW = 0.5607
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.4944
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT5G46150
| PredictedAffinity Capture-MS | FSW = 0.1850
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT5G66360
| PredictedAffinity Capture-MS | FSW = 0.0489
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
| AT2G03667
| PredictedAffinity Capture-MS | FSW = 0.4366
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT2G19910
| PredictedAffinity Capture-MS | FSW = 0.2704
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G29390
| PredictedAffinity Capture-MS | FSW = 0.4521
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.5624
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.4250
| Unknown | ATATG18A |
| AT4G25860
| PredictedAffinity Capture-MS | FSW = 0.4493
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
| AT4G26810
| PredictedAffinity Capture-MS | FSW = 0.1995
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.5426
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.4137
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G54200
| PredictedAffinity Capture-MS | FSW = 0.3115
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT2G18220
| PredictedAffinity Capture-MS | FSW = 0.1516
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT1G52930
| PredictedAffinity Capture-MS | FSW = 0.2173
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT4G15770
| PredictedAffinity Capture-MS | FSW = 0.1246
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT1G79150
| PredictedAffinity Capture-MS | FSW = 0.1203
| Unknown | BINDING |
| AT4G01560
| PredictedAffinity Capture-MS | FSW = 0.1564
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT1G29965
| PredictedAffinity Capture-MS | FSW = 0.0778
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
| AT1G36240
| PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
| AT1G22760
| PredictedSynthetic Rescue | FSW = 0.0083
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT1G71370
| PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0663
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G05450
| PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1230
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
| AT2G26490
| PredictedGene fusion method | FSW = 0.0118
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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