Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G62770 - ( AtATG18a )
124 Proteins interacs with AT3G62770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.4315
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT4G38510 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.3272
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G53850 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.4309
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G07680 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0725
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0275
| Unknown | UNKNOWN PROTEIN |
AT5G05150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0620
| Unknown | ATATG18E |
AT3G22110 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.4396
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.4091
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.3637
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.4542
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G20550 | Predictedco-fractionationCo-fractionation | FSW = 0.0404
| Unknown | DDL (DAWDLE) |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.4563
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0953
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G39290 | Predictedinterologs mappingAffinity Capture-MS | FSW = 0.0946
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.4722
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT1G64190 | PredictedSynthetic Lethality | FSW = 0.0162
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.2733
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G06290 | PredictedSynthetic Lethality | FSW = 0.0150
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G19660 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0508
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G48860 | PredictedAffinity Capture-MS | FSW = 0.0269
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G06040 | PredictedAffinity Capture-MS | FSW = 0.4092
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT1G80190 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic RescueCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternCo-crystal StructureSynthetic Rescue | FSW = 0.1236
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3358
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.4439
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT2G45710 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0806
| Unknown | 40S RIBOSOMAL PROTEIN S27 (RPS27A) |
AT1G02780 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSfar western blottingAffinity Capture-WesternReconstituted ComplexSynthetic Lethalitysynthetic growth defect | FSW = 0.0442
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.4374
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G64740 | PredictedSynthetic Lethality | FSW = 0.0171
| Unknown | CESA6 (CELLULOSE SYNTHASE 6) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G55690 | PredictedSynthetic Lethality | FSW = 0.0252
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.3519
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.4509
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.1208
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.3228
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G19690 | Predictedco-fractionationCo-fractionation | FSW = 0.0440
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT4G08800 | PredictedSynthetic Lethality | FSW = 0.0052
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.4381
| Unknown | ZINC ION BINDING |
AT5G47100 | Predictedtwo hybridReconstituted Complextwo hybrid | FSW = 0.0220
| Unknown | CBL9 CALCIUM ION BINDING |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.3795
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.3608
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0608
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.4806
| Unknown | HTA6 DNA BINDING |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.3808
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G34440 | PredictedAffinity Capture-MS | FSW = 0.0350
| Unknown | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.3707
| Unknown | HISTONE H2B PUTATIVE |
AT2G41380 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0341
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G53530 | PredictedSynthetic Lethality | FSW = 0.0791
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT2G47510 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0429
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1267
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.3756
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT3G18480 | PredictedSynthetic Lethality | FSW = 0.0063
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.4302
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.3795
| Unknown | BINDING |
AT2G14610 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0644
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0302
| Unknown | ATPRB1 |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.1655
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2518
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.4746
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.4228
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5212
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT2G18230 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.3819
| Unknown | PSF2 |
AT2G29540 | PredictedSynthetic Lethality | FSW = 0.0290
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G19730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0073
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.3725
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G23460 | PredictedSynthetic Lethality | FSW = 0.0128
| Unknown | POLYGALACTURONASE |
AT1G29970 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0720
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G80710 | PredictedDosage Growth Defect | FSW = 0.0352
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G31260 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0363
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G32220 | Predictedinterologs mappingAffinity Capture-WesternSynthetic Rescue | FSW = 0.0828
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT2G43190 | PredictedDosage Growth Defect | FSW = 0.0228
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT2G47090 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0768
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G08650 | PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT3G26690 | PredictedSynthetic Lethality | FSW = 0.0085
| Unknown | ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE |
AT3G27110 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0076
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.4211
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G15440 | PredictedSynthetic Lethality | FSW = 0.0319
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.3687
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.2905
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.4596
| Unknown | UNKNOWN PROTEIN |
AT1G54940 | PredictedSynthetic Lethality | FSW = 0.0331
| Unknown | PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G55060 | PredictedSynthetic Lethality | FSW = 0.0089
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.3226
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.4713
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.4683
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4250
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.4449
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2190
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.2955
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.0731
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G35390 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.2061
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.4279
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G03773 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S CS DOMAIN (INTERPROIPR007052) HSP20-LIKE CHAPERONE (INTERPROIPR008978) CS (INTERPROIPR017447) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS GLYCINE-RICH PROTEIN (TAIRAT4G024502) HAS 482 BLAST HITS TO 482 PROTEINS IN 157 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 241 FUNGI - 87 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT3G04710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.0739
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.3686
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.4838
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.3893
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.3945
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4001
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.3908
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G00980 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.4362
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.1416
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4468
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.4329
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.4091
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.3342
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0764
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G24840 | PredictedReconstituted ComplexAffinity Capture-WesternReconstituted Complexinterologs mapping | FSW = 0.0817
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.3518
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.2853
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G54800 | PredictedAffinity Capture-MS | FSW = 0.0407
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.1757
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT4G20330 | PredictedSynthetic Lethality | FSW = 0.0138
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT4G32930 | PredictedSynthetic Lethality | FSW = 0.0055
| Unknown | UNKNOWN PROTEIN |
AT5G01430 | PredictedSynthetic Lethality | FSW = 0.0219
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G40530 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT1G71190 | PredictedShared biological functionCo-expression | FSW = 0.0080
| Unknown | SAG18 (SENESCENCE ASSOCIATED GENE 18) |
AT2G40810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0279
| Unknown | ATATG18C |
AT3G56440 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0478
| Unknown | ATATG18D |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454