Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12530 - ( PSF2 )
129 Proteins interacs with AT3G12530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.5350
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.2540
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1600
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.4666
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.4604
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62150 | PredictedAffinity Capture-MS | FSW = 0.1797
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5411
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.3837
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.5593
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.4248
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.4041
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.2940
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5485
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.3886
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.1356
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.5185
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3477
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.2206
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.5263
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT2G01350 | PredictedAffinity Capture-MS | FSW = 0.0772
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
AT1G80190 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0412
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3874
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G06040 | PredictedAffinity Capture-MS | FSW = 0.5144
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.2595
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3510
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.4793
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.4065
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.4723
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | ARAC10 GTP BINDING |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.3230
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G28950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2436
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.3542
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.4968
| Unknown | ZINC ION BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.3232
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.5158
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4087
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.2612
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.5156
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.1081
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.3952
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4260
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0036
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1952
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT1G44900 | PredictedAffinity Capture-Western | FSW = 0.0510
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.1340
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5269
| Unknown | HTA6 DNA BINDING |
AT2G23460 | PredictedAffinity Capture-MS | FSW = 0.2547
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT1G34065 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2476
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3546
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.4783
| Unknown | BINDING |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.3648
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.4485
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2869
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.6330
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.5532
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT5G40820 | PredictedSynthetic Lethality | FSW = 0.0117
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.4307
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.1355
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5752
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT5G49010 | Predictedtwo hybridtwo hybridinterologs mappingAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.0422
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT1G05910 | PredictedAffinity Capture-MS | FSW = 0.1127
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.3974
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G14310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1978
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.2246
| Unknown | UNKNOWN PROTEIN |
AT1G33110 | PredictedAffinity Capture-MS | FSW = 0.4451
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G33770 | PredictedAffinity Capture-MS | FSW = 0.0777
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1439
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.5292
| Unknown | UNKNOWN PROTEIN |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.4643
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5109
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.4767
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4924
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G78970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1092
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G79210 | PredictedAffinity Capture-MS | FSW = 0.1425
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.3641
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.2748
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G20980 | PredictedAffinity Capture-Western | FSW = 0.0378
| Unknown | MCM10 |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.3761
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.4022
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.2460
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.4630
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.4942
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G05785 | PredictedAffinity Capture-MS | FSW = 0.1459
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G10580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0025
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.4290
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.4258
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1756
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G63370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0476
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.5097
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.2748
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.3359
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0608
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G47760 | PredictedAffinity Capture-MS | FSW = 0.1042
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G21460 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.6519
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.6931
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53510 | PredictedAffinity Capture-MS | FSW = 0.2512
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G53880 | PredictedCo-purification | FSW = 0.0684
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0972
| Unknown | HTA12 DNA BINDING |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.3245
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4112
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G47430 | PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | ZINC ION BINDING |
AT5G48710 | PredictedAffinity Capture-MS | FSW = 0.0666
| Unknown | UBIQUITIN-RELATED |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5118
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3160
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5239
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.3976
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G25100 | PredictedAffinity Capture-Western | FSW = 0.0381
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G42660 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0098
| Unknown | NUCLEOTIDE BINDING |
AT3G47940 | PredictedAffinity Capture-MS | FSW = 0.1829
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G50880 | PredictedAffinity Capture-MS | FSW = 0.0843
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT3G57550 | PredictedAffinity Capture-MS | FSW = 0.1749
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.3819
| Unknown | ATATG18A |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.1344
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.4923
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.3419
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.2984
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.6907
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.3077
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.1493
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.4562
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.3821
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G22110 | PredictedAffinity Capture-Western | FSW = 0.0221
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.5775
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT1G19080 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0756
| Unknown | TTN10 (TITAN 10) |
AT4G16970 | PredictedColocalization | FSW = 0.0174
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G17410 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454