Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20980 - ( MCM10 )
21 Proteins interacs with AT2G20980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G44900 | Predictedtwo hybridin vivoin vitrotwo hybridAffinity Capture-MSSynthetic Lethality | FSW = 0.3988
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G54910 | Predictedsynthetic growth defect | FSW = 0.0379
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G02060 | PredictedSynthetic Rescuetwo hybridtwo hybridin vivoin vitrotwo hybridAffinity Capture-MSSynthetic Lethality | FSW = 0.3529
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT2G35630 | Predictedtwo hybrid | FSW = 0.0317
| Unknown | MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING |
AT3G12530 | PredictedAffinity Capture-Western | FSW = 0.0378
| Unknown | PSF2 |
AT2G42120 | Predictedsynthetic growth defect | FSW = 0.0342
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G37560 | Predictedin vivoin vitrotwo hybridAffinity Capture-MSAffinity Capture-Westernsynthetic growth defect | FSW = 0.1880
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT2G01120 | PredictedAffinity Capture-MS | FSW = 0.3266
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT2G16440 | Predictedin vivoin vitrotwo hybridAffinity Capture-Western | FSW = 0.4235
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT3G25100 | PredictedSynthetic LethalityAffinity Capture-MSColocalizationSynthetic Lethalityinterologs mapping | FSW = 0.2342
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT5G44635 | Predictedtwo hybridtwo hybridtwo hybridin vivoin vitrotwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.2606
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G46280 | Predictedin vivoin vitrotwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.2366
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G41350 | PredictedAffinity Capture-MS | FSW = 0.1634
| Unknown | UNKNOWN PROTEIN |
AT1G08260 | Predictedsynthetic growth defect | FSW = 0.0627
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G67320 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0985
| Unknown | DNA PRIMASE LARGE SUBUNIT FAMILY |
AT2G07690 | PredictedSynthetic Rescue | FSW = 0.3137
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT4G12620 | PredictedAffinity Capture-Western | FSW = 0.2491
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT5G49010 | PredictedAffinity Capture-MS | FSW = 0.2717
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT5G67100 | PredictedAffinity Capture-Western | FSW = 0.0779
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT5G22110 | Predictedsynthetic growth defect | FSW = 0.1379
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454