Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G08260 - ( TIL1 (TILTED 1) DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding )
75 Proteins interacs with AT1G08260Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | Predictedinterologs mapping | FSW = 0.0406
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0363
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G04120 | PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT2G37270 | PredictedSynthetic Lethality | FSW = 0.0436
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G36750 | PredictedReconstituted Complex | FSW = 0.1091
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G06510 | PredictedSynthetic Lethality | FSW = 0.0773
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G65240 | Predictedco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationinterologs mapping | FSW = 0.1522
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G03920 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0274
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT1G07790 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0363
| Unknown | HTB1 DNA BINDING |
AT3G54670 | Predictedtwo hybridSynthetic Lethalitysynthetic growth defectCo-expression | FSW = 0.0288
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT3G47370 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.0055
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT3G09740 | Predictedinterologs mapping | FSW = 0.0242
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT5G03540 | PredictedPhenotypic Suppression | FSW = 0.0488
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
AT3G18524 | PredictedPhenotypic EnhancementPhenotypic EnhancementCo-expression | FSW = 0.1062
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT4G02070 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.0949
| Unknown | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT5G41580 | PredictedPhenotypic Suppression | FSW = 0.0398
| Unknown | ZINC ION BINDING |
AT1G21690 | PredictedSynthetic LethalityCo-expression | FSW = 0.0824
| Unknown | EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G13445 | PredictedAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pairPhenotypic Suppression | FSW = 0.0469
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G44900 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0338
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0312
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G57150 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0189
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT1G76300 | Predictedsynthetic growth defect | FSW = 0.0249
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT2G29570 | Predictedin vitro | FSW = 0.0894
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G07370 | PredictedPhenotypic Suppression | FSW = 0.0778
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G18040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0224
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT3G29800 | PredictedAffinity Capture-Western | FSW = 0.0482
| Unknown | AAA-TYPE ATPASE FAMILY |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT2G14580 | PredictedCo-purification | FSW = 0.0228
| Unknown | ATPRB1 |
AT4G33730 | Predictedinterologs mappingPhenotypic Enhancementinterologs mapping | FSW = 0.0970
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G01020 | PredictedAffinity Capture-Western | FSW = 0.1237
| Unknown | ARV1 |
AT5G66130 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1184
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT2G43460 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1209
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT5G63960 | PredictedSynthetic LethalityPhenotypic EnhancementEnriched domain pairCo-expression | FSW = 0.2574
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G02950 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THO COMPLEX SUBUNIT 7 (INTERPROIPR018018) THO COMPLEX SUBUNIT 7/MFT1P (INTERPROIPR008501) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G167901) HAS 2049 BLAST HITS TO 1787 PROTEINS IN 271 SPECIES ARCHAE - 31 BACTERIA - 158 METAZOA - 1041 FUNGI - 168 PLANTS - 75 VIRUSES - 26 OTHER EUKARYOTES - 550 (SOURCE NCBI BLINK) |
AT5G67100 | PredictedReconstituted ComplexPhenotypic Enhancementin vitroin vivoEnriched domain pairCo-expression | FSW = 0.1319
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT1G04730 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0544
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08880 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0221
| Unknown | H2AXA DNA BINDING |
AT1G44180 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G59580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0475
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT1G66590 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | COX19 FAMILY PROTEIN |
AT2G01070 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-purificationco-fractionationCo-fractionationinterologs mapping | FSW = 0.1409
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK) |
AT2G20980 | Predictedsynthetic growth defect | FSW = 0.0627
| Unknown | MCM10 |
AT2G28720 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | HISTONE H2B PUTATIVE |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0396
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G39840 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G46280 | PredictedAffinity Capture-Western | FSW = 0.0502
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G14100 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT3G17520 | PredictedReconstituted Complex | FSW = 0.1163
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT3G60240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0480
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G02460 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.1361
| Unknown | PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING |
AT4G16710 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.1088
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 28 |
AT4G32720 | PredictedAffinity Capture-MS | FSW = 0.0743
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
AT5G11570 | PredictedAffinity Capture-MStwo hybridReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted Complextwo hybridco-fractionationCo-fractionationinterologs mapping | FSW = 0.2562
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G22110 | Predictedtwo hybridtwo hybridtwo hybridSynthetic LethalityReconstituted Complexinterologs mappingCo-purificationCo-purificationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-WesternCo-purificationAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSReconstituted ComplexPhenotypic EnhancementAffinity Capture-WesternCo-purificationco-fractionationinterologs mappingSynthetic LethalityCo-crystal Structure | FSW = 0.1050
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G26680 | PredictedPhenotypic EnhancementPhenotypic EnhancementCo-expression | FSW = 0.0427
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G41880 | PredictedReconstituted ComplexCo-purificationCo-expression | FSW = 0.0285
| Unknown | POLA3 DNA PRIMASE |
AT5G53770 | Predictedtwo hybridinterologs mappingAffinity Capture-Western | FSW = 0.0246
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G64760 | PredictedbiochemicalAffinity Capture-WesternReconstituted Complex | FSW = 0.0122
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT1G18090 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0847
| Unknown | EXONUCLEASE PUTATIVE |
AT1G67320 | PredictedReconstituted ComplexCo-expression | FSW = 0.0843
| Unknown | DNA PRIMASE LARGE SUBUNIT FAMILY |
AT1G67500 | PredictedPhenotypic Suppression | FSW = 0.0308
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G80710 | PredictedDosage Growth Defect | FSW = 0.0385
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G43190 | PredictedDosage Growth Defect | FSW = 0.0196
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G24040 | Predictedsynthetic growth defect | FSW = 0.1091
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G29550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0117
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G17370 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
AT1G29630 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0657
| Unknown | NUCLEASE |
AT2G27120 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2854
| Unknown | TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454