Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G44180 - ( aminoacylase putative / N-acyl-L-amino-acid amidohydrolase putative )
58 Proteins interacs with AT1G44180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedPhenotypic Suppression | FSW = 0.0507
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G17360 | Predictedsynthetic growth defect | FSW = 0.0915
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.0866
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G09660 | Predictedsynthetic growth defecttwo hybridAffinity Capture-Western | FSW = 0.2289
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G58610 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2238
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT1G64190 | PredictedPhenotypic Enhancement | FSW = 0.0671
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G19660 | Predictedsynthetic growth defect | FSW = 0.0450
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.0736
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G27450 | PredictedPhenotypic Enhancement | FSW = 0.0868
| Unknown | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT1G04750 | Predictedsynthetic growth defectSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2171
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G47000 | PredictedSynthetic Rescue | FSW = 0.0391
| Unknown | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE |
AT1G21700 | Predictedsynthetic growth defectPhenotypic EnhancementSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.1768
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.0818
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT5G08335 | PredictedPhenotypic Enhancement | FSW = 0.0340
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT2G05170 | PredictedPhenotypic Enhancement | FSW = 0.0861
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G62800 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1534
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.2120
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.1350
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G08260 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G10280 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | UNKNOWN PROTEIN |
AT1G20693 | PredictedPhenotypic Enhancement | FSW = 0.1179
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1111
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G10210 | Predictedtwo hybrid | FSW = 0.0707
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G15440 | Predictedtwo hybrid | FSW = 0.0261
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0859
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G47830 | PredictedSynthetic Lethality | FSW = 0.2141
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G66590 | Predictedsynthetic growth defectSynthetic LethalitySynthetic Lethalitysynthetic growth defect | FSW = 0.2457
| Unknown | COX19 FAMILY PROTEIN |
AT3G01100 | PredictedPhenotypic Enhancement | FSW = 0.0836
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.1510
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | Predictedsynthetic growth defect | FSW = 0.2178
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.1761
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G00810 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G15410 | PredictedPhenotypic Enhancement | FSW = 0.1737
| Unknown | PUX5 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B PRIME GAMMA) PROTEIN BINDING |
AT4G21490 | Predictedsynthetic growth defect | FSW = 0.2452
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | Predictedsynthetic growth defect | FSW = 0.2146
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29580 | Predictedsynthetic growth defect | FSW = 0.2158
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.1280
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G16170 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.1707
| Unknown | UNKNOWN PROTEIN |
AT5G16980 | Predictedsynthetic growth defect | FSW = 0.2884
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.1023
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G21070 | PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | NADK1 (NAD KINASE 1) NAD+ KINASE/ NADH KINASE/ CALMODULIN BINDING |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.2612
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G45190 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT1G44820 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0633
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT4G38220 | PredictedPhylogenetic profile method | FSW = 0.0484
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454