Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26810 - ( SWIB complex BAF60b domain-containing protein )
45 Proteins interacs with AT4G26810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0377
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G19860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2406
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.2382
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.1893
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3036
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G14120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1034
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT2G21540 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.3445
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G62300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2626
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT3G56450 | PredictedAffinity Capture-MS | FSW = 0.0612
| Unknown | ALPHA-SNAP1 BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.1134
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3768
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0751
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT5G44500 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2332
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT1G72330 | Predictedtwo hybrid | FSW = 0.0560
| Unknown | ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2278
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2553
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0581
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.2782
| Unknown | UNKNOWN PROTEIN |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3986
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.3036
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3983
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G20650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2090
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3912
| Unknown | HISTONE H4 |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.1416
| Unknown | ATATG18A |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1233
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G44180 | PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.2296
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.3930
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.2514
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G66240 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.1995
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.2292
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3230
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.3834
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.1595
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.2403
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G44590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0594
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2553
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G10130 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2415
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G24670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2046
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.2197
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G27640 | PredictedAffinity Capture-MS | FSW = 0.3375
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G31760 | PredictedPhylogenetic profile method | FSW = 0.0186
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454