Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10130 - ( DNAJ heat shock N-terminal domain-containing protein )
31 Proteins interacs with AT4G10130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G11260 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT5G22060 | Predictedinterologs mapping | FSW = 0.0278
| Unknown | ATJ2 PROTEIN BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0038
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G04340 | PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G14350 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1054
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0549
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT1G77180 | PredictedSynthetic Rescue | FSW = 0.0593
| Unknown | CHROMATIN PROTEIN FAMILY |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.0037
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G17810 | PredictedPhenotypic Enhancement | FSW = 0.0258
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT1G19730 | PredictedPhenotypic Enhancement | FSW = 0.0708
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.1197
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G09810 | PredictedPhenotypic EnhancementAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1805
| Unknown | ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11) |
AT1G10980 | PredictedPhenotypic Enhancement | FSW = 0.1289
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0587
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G78770 | PredictedPhenotypic Enhancement | FSW = 0.0272
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G78960 | PredictedAffinity Capture-MS | FSW = 0.0456
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0422
| Unknown | XIF MOTOR |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | HISTONE H4 |
AT2G32170 | Predictedtwo hybrid | FSW = 0.1270
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321603) HAS 362 BLAST HITS TO 319 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 132 FUNGI - 130 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 75 (SOURCE NCBI BLINK) |
AT4G29580 | PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G66640 | Predictedbiochemical | FSW = 0.0050
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.0504
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G46920 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | INTRON MATURASE TYPE II FAMILY PROTEIN |
AT2G32160 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT5G61230 | PredictedGene fusion method | FSW = 0.0672
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454