Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10980 - ( INVOLVED IN biological_process unknown LOCATED IN vacuole EXPRESSED IN 8 plant structures EXPRESSED DURING 6 growth stages CONTAINS InterPro DOMAIN/s Transmembrane receptor eukaryota (InterProIPR009637) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G616701) Has 482 Blast hits to 481 proteins in 121 species Archae - 0 Bacteria - 0 Metazoa - 255 Fungi - 99 Plants - 97 Viruses - 0 Other Eukaryotes - 31 (source NCBI BLink) )

31 Proteins interacs with AT1G10980
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.0629

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G22890

Predicted

Phenotypic Enhancement

FSW = 0.0617

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT3G48170

Predicted

Phenotypic Enhancement

FSW = 0.0644

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT3G55400

Predicted

Phenotypic Enhancement

FSW = 0.0653

Unknown

OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G13430

Predicted

Affinity Capture-MS

FSW = 0.0627

Unknown

IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) 4 IRON 4 SULFUR CLUSTER BINDING / HYDRO-LYASE/ LYASE
AT4G36640

Predicted

Phenotypic Enhancement

FSW = 0.0258

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G15080

Predicted

two hybrid

FSW = 0.0290

Unknown

LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) ACID PHOSPHATASE/ PHOSPHATIDATE PHOSPHATASE
AT4G14350

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Synthetic Rescue

synthetic growth defect

FSW = 0.1054

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G80050

Predicted

Synthetic Lethality

FSW = 0.1221

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT5G02730

Predicted

Phenotypic Suppression

FSW = 0.0407

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G54840

Predicted

synthetic growth defect

FSW = 0.0830

Unknown

ARA6 GTP BINDING / GTPASE
AT3G07140

Predicted

two hybrid

FSW = 0.0930

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT1G05180

Predicted

Phenotypic Enhancement

FSW = 0.0859

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT1G19730

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1501

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G09810

Predicted

Phenotypic Enhancement

FSW = 0.2284

Unknown

ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11)
AT1G29630

Predicted

Synthetic Rescue

synthetic growth defect

FSW = 0.0689

Unknown

NUCLEASE
AT1G52500

Predicted

Synthetic Lethality

FSW = 0.0705

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G55060

Predicted

Synthetic Lethality

FSW = 0.0317

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G68530

Predicted

Phenotypic Suppression

FSW = 0.0711

Unknown

KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS
AT2G48100

Predicted

Synthetic Lethality

FSW = 0.1138

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G59540Predicted

Synthetic Lethality

FSW = 0.0850

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT4G10130

Predicted

Phenotypic Enhancement

FSW = 0.1289

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G27130

Predicted

Synthetic Lethality

FSW = 0.1740

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G29580

Predicted

Phenotypic Enhancement

FSW = 0.3064

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT4G34370

Predicted

Phenotypic Enhancement

FSW = 0.1718

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT5G01770

Predicted

Phenotypic Enhancement

interologs mapping

FSW = 0.1374

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G16170

Predicted

Phenotypic Enhancement

FSW = 0.0708

Unknown

UNKNOWN PROTEIN
ATCG00905Predicted

Co-crystal Structure

Co-purification

Co-purification

Reconstituted Complex

Reconstituted Complex

two hybrid

Reconstituted Complex

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Co-purification

Affinity Capture-Western

Co-crystal Structure

Phenotypic Enhancement

FSW = 0.3072

Unknown

CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT
AT1G27320

Predicted

Phenotypic Enhancement

FSW = 0.0943

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G66590

Predicted

Synthetic Rescue

FSW = 0.2009

Unknown

COX19 FAMILY PROTEIN
AT3G50780

Predicted

Phenotypic Enhancement

FSW = 0.0549

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454