Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10980 - ( INVOLVED IN biological_process unknown LOCATED IN vacuole EXPRESSED IN 8 plant structures EXPRESSED DURING 6 growth stages CONTAINS InterPro DOMAIN/s Transmembrane receptor eukaryota (InterProIPR009637) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G616701) Has 482 Blast hits to 481 proteins in 121 species Archae - 0 Bacteria - 0 Metazoa - 255 Fungi - 99 Plants - 97 Viruses - 0 Other Eukaryotes - 31 (source NCBI BLink) )
31 Proteins interacs with AT1G10980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.0629
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G22890 | PredictedPhenotypic Enhancement | FSW = 0.0617
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.0644
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G55400 | PredictedPhenotypic Enhancement | FSW = 0.0653
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G13430 | PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) 4 IRON 4 SULFUR CLUSTER BINDING / HYDRO-LYASE/ LYASE |
AT4G36640 | PredictedPhenotypic Enhancement | FSW = 0.0258
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G15080 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) ACID PHOSPHATASE/ PHOSPHATIDATE PHOSPHATASE |
AT4G14350 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementSynthetic Rescuesynthetic growth defect | FSW = 0.1054
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.1221
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0407
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | Predictedsynthetic growth defect | FSW = 0.0830
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G07140 | Predictedtwo hybrid | FSW = 0.0930
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.0859
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G19730 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1501
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G09810 | PredictedPhenotypic Enhancement | FSW = 0.2284
| Unknown | ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11) |
AT1G29630 | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.0689
| Unknown | NUCLEASE |
AT1G52500 | PredictedSynthetic Lethality | FSW = 0.0705
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G55060 | PredictedSynthetic Lethality | FSW = 0.0317
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G68530 | PredictedPhenotypic Suppression | FSW = 0.0711
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.1138
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0850
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G10130 | PredictedPhenotypic Enhancement | FSW = 0.1289
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G27130 | PredictedSynthetic Lethality | FSW = 0.1740
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29580 | PredictedPhenotypic Enhancement | FSW = 0.3064
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT4G34370 | PredictedPhenotypic Enhancement | FSW = 0.1718
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT5G01770 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.1374
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G16170 | PredictedPhenotypic Enhancement | FSW = 0.0708
| Unknown | UNKNOWN PROTEIN |
ATCG00905 | PredictedCo-crystal StructureCo-purificationCo-purificationReconstituted ComplexReconstituted Complextwo hybridReconstituted ComplexAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MStwo hybridCo-purificationAffinity Capture-WesternCo-crystal StructurePhenotypic Enhancement | FSW = 0.3072
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.0943
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G66590 | PredictedSynthetic Rescue | FSW = 0.2009
| Unknown | COX19 FAMILY PROTEIN |
AT3G50780 | PredictedPhenotypic Enhancement | FSW = 0.0549
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454