Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29630 - ( nuclease )
48 Proteins interacs with AT1G29630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G12360 | Predictedtwo hybrid | FSW = 0.0064
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT4G12650 | PredictedPhenotypic Enhancement | FSW = 0.0149
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS PLASMA MEMBRANE VACUOLE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G351601) HAS 983 BLAST HITS TO 980 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 434 FUNGI - 144 PLANTS - 228 VIRUSES - 0 OTHER EUKARYOTES - 177 (SOURCE NCBI BLINK) |
AT4G33650 | PredictedPhenotypic Enhancement | FSW = 0.0517
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT3G55400 | PredictedPhenotypic Suppression | FSW = 0.0095
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G17390 | PredictedSynthetic Rescue | FSW = 0.0157
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT4G04340 | PredictedPhenotypic Enhancement | FSW = 0.0451
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G53960 | Predictedsynthetic growth defect | FSW = 0.0151
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G18524 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridPhenotypic Enhancementin vivoin vivoin vitroin vitroAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSPhenotypic EnhancementAffinity Capture-Westerninterologs mappinginterologs mapping | FSW = 0.1694
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT1G16970 | PredictedSynthetic Rescue | FSW = 0.0745
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT1G21700 | PredictedSynthetic Lethality | FSW = 0.0651
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G08720 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT2G36170 | PredictedAffinity Capture-MSSynthetic LethalityReconstituted ComplexReconstituted ComplexSynthetic RescueAffinity Capture-MSinterologs mapping | FSW = 0.0343
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT2G29570 | PredictedAffinity Capture-MS | FSW = 0.0690
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.1102
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.0384
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.1529
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT2G47990 | PredictedAffinity Capture-Western | FSW = 0.0389
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT2G31970 | PredictedPhenotypic Enhancementinterologs mappinginterologs mappingPhenotypic Enhancementinterologs mapping | FSW = 0.0793
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.0377
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT5G63960 | PredictedSynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.1211
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G54260 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementinterologs mappinginterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.0865
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G21790 | PredictedPhenotypic Enhancement | FSW = 0.0210
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT4G17190 | PredictedAffinity Capture-Western | FSW = 0.0272
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G15200 | Predictedtwo hybridtwo hybrid | FSW = 0.0157
| Unknown | PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT3G18740 | Predictedtwo hybrid | FSW = 0.0079
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT4G09140 | Predictedtwo hybridtwo hybridtwo hybridin vivoAffinity Capture-MSPhenotypic Enhancementtwo hybridinteraction prediction | FSW = 0.1982
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT4G25540 | Predictedin vivoin vitroPhenotypic Enhancement | FSW = 0.1596
| Unknown | MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT1G10980 | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.0689
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT4G25950 | PredictedPhenotypic Suppression | FSW = 0.0170
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.0397
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT1G66590 | PredictedSynthetic Lethality | FSW = 0.0466
| Unknown | COX19 FAMILY PROTEIN |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.0302
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G54380 | PredictedPhenotypic Suppression | FSW = 0.0123
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G29580 | Predictedsynthetic growth defect | FSW = 0.0660
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01770 | Predictedinterologs mappinginterologs mapping | FSW = 0.1004
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G11500 | Predictedinterologs mappingsynthetic growth defectAffinity Capture-Westerninterologs mappingSynthetic Rescue | FSW = 0.1152
| Unknown | UNKNOWN PROTEIN |
AT5G17860 | Predictedsynthetic growth defect | FSW = 0.0554
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT4G02460 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2338
| Unknown | PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING |
AT5G26680 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappingsynthetic growth defectSynthetic Lethalityinteraction predictionEnriched domain pairCo-expression | FSW = 0.0613
| Unknown | ENDONUCLEASE PUTATIVE |
AT1G08260 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0657
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT4G17380 | PredictedPhenotypic Enhancement | FSW = 0.0216
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT3G26680 | PredictedPhenotypic Enhancement | FSW = 0.1387
| Unknown | SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) |
AT1G10930 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0901
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G55300 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0582
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT5G16850 | PredictedSynthetic Rescue | FSW = 0.0686
| Unknown | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE |
AT1G36240 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT5G64550 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | LORICRIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454