Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G12650 - ( LOCATED IN integral to membrane Golgi apparatus plasma membrane vacuole EXPRESSED IN 25 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Nonaspanin (TM9SF) (InterProIPR004240) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G351601) Has 983 Blast hits to 980 proteins in 161 species Archae - 0 Bacteria - 0 Metazoa - 434 Fungi - 144 Plants - 228 Viruses - 0 Other Eukaryotes - 177 (source NCBI BLink) )

18 Proteins interacs with AT4G12650
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G21980

Predicted

Phenotypic Suppression

FSW = 0.0497

Class C:

vacuole

 APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0077

Class C:

vacuole

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G10350

Predicted

Phenotypic Enhancement

FSW = 0.0784

Class C:

vacuole

 POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT2G32670

Predicted

Phenotypic Enhancement

FSW = 0.1793

Unknown

 ATVAMP725
AT4G18800

Predicted

Phenotypic Enhancement

FSW = 0.1014

Unknown

 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT4G25340

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0996

Unknown

 IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT2G19980

Predicted

Phenotypic Suppression

FSW = 0.0713

Unknown

 ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT2G05170

Predicted

Phenotypic Suppression

FSW = 0.0565

Unknown

 ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT4G16420

Predicted

Phenotypic Enhancement

FSW = 0.0890

Unknown

 ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT1G19750

Predicted

Phenotypic Enhancement

FSW = 0.1713

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G27040

Predicted

Phenotypic Suppression

FSW = 0.0797

Unknown

 NITRATE TRANSPORTER PUTATIVE
AT1G29630

Predicted

Phenotypic Enhancement

FSW = 0.0149

Unknown

 NUCLEASE
AT1G64170

Predicted

Phenotypic Enhancement

FSW = 0.1091

Unknown

 ATCHX16 (CATION/H+ EXCHANGER 16) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER
AT4G00800Predicted

Phenotypic Suppression

FSW = 0.1815

Unknown

 BINDING / PROTEIN BINDING / ZINC ION BINDING
AT1G29970

Predicted

Phenotypic Suppression

FSW = 0.1394

Unknown

 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.1273

Unknown

 TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT3G11240

Predicted

Phenotypic Suppression

FSW = 0.1837

Unknown

 ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE
AT5G54940

Predicted

Phenotypic Enhancement

FSW = 0.0587

Unknown

 EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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