Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G17860 - ( CAX7 (calcium exchanger 7) calciumsodium antiporter/ cationcation antiporter )
72 Proteins interacs with AT5G17860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.1544
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT4G01840 | PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0334
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G09660 | Predictedinterologs mapping | FSW = 0.2815
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G58610 | PredictedPhenotypic Enhancement | FSW = 0.3042
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT1G64190 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexCo-purificationco-fractionationCo-fractionationinterologs mapping | FSW = 0.2593
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT3G56160 | PredictedSynthetic Rescue | FSW = 0.1894
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.1764
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.2168
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT5G49030 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G55360 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0067
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G04750 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementPhenotypic Suppression | FSW = 0.2233
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.0854
| Unknown | ATVAMP725 |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0974
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G14350 | Predictedsynthetic growth defect | FSW = 0.1403
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G43900 | Predictedinterologs mapping | FSW = 0.0233
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT1G21700 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2814
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G06960 | Predictedinterologs mappingReconstituted Complexbiochemical | FSW = 0.1643
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G36170 | PredictedAffinity Capture-MSSynthetic Lethalityinterologs mapping | FSW = 0.1496
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.1295
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G64880 | PredictedPhenotypic Suppression | FSW = 0.2039
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.2132
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.0816
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1322
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0221
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT2G47990 | Predictedinterologs mapping | FSW = 0.0713
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT1G62800 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1706
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G13900 | PredictedPhenotypic Enhancement | FSW = 0.1716
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.1096
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G05180 | PredictedSynthetic Rescue | FSW = 0.1804
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G07820 | PredictedPhenotypic EnhancementAffinity Capture-Westerninterologs mapping | FSW = 0.1860
| Unknown | HISTONE H4 |
AT1G35350 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2752
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G47830 | Predictedinterologs mappingSynthetic LethalityPhenotypic Suppression | FSW = 0.3423
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.0816
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G54560 | PredictedPhenotypic Enhancement | FSW = 0.0670
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G78770 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1176
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G19220 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.2124
| Unknown | UNKNOWN PROTEIN |
AT2G23820 | PredictedPhenotypic Suppression | FSW = 0.1200
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT3G01100 | PredictedAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.2911
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G02320 | PredictedSynthetic Lethality | FSW = 0.1917
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT3G22290 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defectSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3864
| Unknown | UNKNOWN PROTEIN |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G43980 | PredictedPhenotypic Enhancement | FSW = 0.0875
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29A) |
AT3G45240 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3393
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.0584
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G17640 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | CKB2 PROTEIN KINASE CK2 REGULATOR |
AT4G29580 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3001
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.3776
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G16170 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2048
| Unknown | UNKNOWN PROTEIN |
AT1G16570 | Predictedtwo hybrid | FSW = 0.0260
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G26690 | PredictedPhenotypic Suppression | FSW = 0.2919
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0906
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G29630 | Predictedsynthetic growth defect | FSW = 0.0554
| Unknown | NUCLEASE |
AT1G55060 | Predictedinterologs mapping | FSW = 0.0915
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.1026
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G74810 | PredictedSynthetic Lethality | FSW = 0.1189
| Unknown | BOR5 ANION EXCHANGER |
AT2G26695 | Predictedinterologs mapping | FSW = 0.0308
| Unknown | BINDING / ZINC ION BINDING |
AT3G54490 | Predictedtwo hybrid | FSW = 0.0416
| Unknown | RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT E) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.1287
| Unknown | UNKNOWN PROTEIN |
AT4G21490 | PredictedPhenotypic Suppression | FSW = 0.3314
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | PredictedSynthetic Lethality | FSW = 0.2963
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G34370 | PredictedPhenotypic Enhancement | FSW = 0.0859
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT5G08160 | PredictedSynthetic Lethality | FSW = 0.0570
| Unknown | ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G16980 | PredictedPhenotypic Enhancement | FSW = 0.3715
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G20340 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2530
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G45620 | PredictedSynthetic RescuePhenotypic Enhancement | FSW = 0.2923
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G47080 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.1168
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT5G60340 | PredictedSynthetic Rescue | FSW = 0.0645
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT5G38030 | PredictedSynthetic Rescue | FSW = 0.0189
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.2023
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454