Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26695 - ( binding / zinc ion binding )

22 Proteins interacs with AT2G26695
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G44300

Predicted

interologs mapping

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Reconstituted Complex

Affinity Capture-MS

Synthetic Lethality

FSW = 0.3367

Unknown

NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT1G26160

Predicted

Affinity Capture-Western

Reconstituted Complex

Synthetic Lethality

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.2355

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT1G54080

Predicted

interaction prediction

FSW = 0.0188

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT2G44510

Predicted

interologs mapping

FSW = 0.1922

Unknown

P21CIP1-BINDING PROTEIN-RELATED
AT2G40290

Predicted

Affinity Capture-Western

FSW = 0.0360

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT1G09540

Predicted

two hybrid

FSW = 0.1731

Unknown

MYB61 (MYB DOMAIN PROTEIN 61) DNA BINDING / TRANSCRIPTION FACTOR
AT3G13900

Predicted

Colocalization

FSW = 0.0204

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT2G18230

Predicted

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Reconstituted Complex

FSW = 0.0741

Unknown

ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G55060

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

interologs mapping

Synthetic Lethality

FSW = 0.0856

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G72340

Predicted

Synthetic Rescue

FSW = 0.0576

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT2G34180

Predicted

Reconstituted Complex

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Reconstituted Complex

Co-crystal Structure

Phenotypic Suppression

FSW = 0.1298

Unknown

CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G41340

Predicted

Affinity Capture-MS

FSW = 0.0433

Unknown

RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G14320Predicted

Synthetic Rescue

FSW = 0.0608

Unknown

60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB)
AT4G34880

Predicted

Reconstituted Complex

FSW = 0.1341

Unknown

AMIDASE FAMILY PROTEIN
AT5G56740

Predicted

Synthetic Lethality

FSW = 0.0729

Unknown

HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT4G25950

Predicted

interologs mapping

FSW = 0.0496

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G17860

Predicted

interologs mapping

FSW = 0.0308

Unknown

CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G17370

Predicted

Affinity Capture-MS

FSW = 0.0246

Unknown

UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING
AT5G26680

Predicted

synthetic growth defect

FSW = 0.0140

Unknown

ENDONUCLEASE PUTATIVE
AT1G47490

Predicted

two hybrid

FSW = 0.0291

Unknown

ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING
AT1G47500

Predicted

interaction prediction

FSW = 0.0229

Unknown

ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING
AT5G25490

Predicted

Phylogenetic profile method

FSW = 0.1259

Unknown

ZINC FINGER (RAN-BINDING) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454