Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26695 - ( binding / zinc ion binding )
22 Proteins interacs with AT2G26695Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G44300 | Predictedinterologs mappingReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted ComplexAffinity Capture-MSSynthetic Lethality | FSW = 0.3367
| Unknown | NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT1G26160 | PredictedAffinity Capture-WesternReconstituted ComplexSynthetic LethalityAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.2355
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT1G54080 | Predictedinteraction prediction | FSW = 0.0188
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT2G44510 | Predictedinterologs mapping | FSW = 0.1922
| Unknown | P21CIP1-BINDING PROTEIN-RELATED |
AT2G40290 | PredictedAffinity Capture-Western | FSW = 0.0360
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT1G09540 | Predictedtwo hybrid | FSW = 0.1731
| Unknown | MYB61 (MYB DOMAIN PROTEIN 61) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G13900 | PredictedColocalization | FSW = 0.0204
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT2G18230 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted Complex | FSW = 0.0741
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G55060 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridinterologs mappingSynthetic Lethality | FSW = 0.0856
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G72340 | PredictedSynthetic Rescue | FSW = 0.0576
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT2G34180 | PredictedReconstituted ComplexAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybridtwo hybridAffinity Capture-WesternReconstituted ComplexCo-crystal StructurePhenotypic Suppression | FSW = 0.1298
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G41340 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G14320 | PredictedSynthetic Rescue | FSW = 0.0608
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT4G34880 | PredictedReconstituted Complex | FSW = 0.1341
| Unknown | AMIDASE FAMILY PROTEIN |
AT5G56740 | PredictedSynthetic Lethality | FSW = 0.0729
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT4G25950 | Predictedinterologs mapping | FSW = 0.0496
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G17860 | Predictedinterologs mapping | FSW = 0.0308
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G17370 | PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0140
| Unknown | ENDONUCLEASE PUTATIVE |
AT1G47490 | Predictedtwo hybrid | FSW = 0.0291
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
AT1G47500 | Predictedinteraction prediction | FSW = 0.0229
| Unknown | ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING |
AT5G25490 | PredictedPhylogenetic profile method | FSW = 0.1259
| Unknown | ZINC FINGER (RAN-BINDING) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454