Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G21790 - ( RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP binding / protein binding / ribonucleoside-diphosphate reductase )
29 Proteins interacs with AT2G21790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0287
| Unknown | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT2G39800 | Predictedpull down | FSW = 0.0333
| Unknown | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHETASE |
AT2G25830 | Predictedpull down | FSW = 0.0313
| Unknown | YEBC-RELATED |
AT1G03680 | Predictedtandem affinity purification | FSW = 0.0128
| Unknown | ATHM1 ENZYME ACTIVATOR |
AT5G62810 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | PEX14 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G54840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0354
| Unknown | SGP1 GTP BINDING |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | SGP2 GTP BINDING |
AT4G02930 | Predictedpull down | FSW = 0.0135
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT5G66130 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0307
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT3G23580 | Predictedpull downAffinity Capture-MSin vivo | FSW = 0.1250
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT5G40820 | Predictedinterologs mappinginterologs mappingSynthetic Rescue | FSW = 0.0548
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0017
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G02640 | Predictedpull down | FSW = 0.0333
| Unknown | BXL2 (BETA-XYLOSIDASE 2) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT3G27060 | Predictedin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-crystal StructureCo-expression | FSW = 0.0866
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT1G10930 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0461
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G16280 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0426
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G18090 | PredictedPhenotypic Enhancement | FSW = 0.0697
| Unknown | EXONUCLEASE PUTATIVE |
AT1G52740 | Predictedsynthetic growth defect | FSW = 0.0265
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G79730 | Predictedinterologs mapping | FSW = 0.0241
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G39840 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.0280
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G12030 | PredictedAffinity Capture-MS | FSW = 0.0645
| Unknown | AT-HSP176A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 176A) UNFOLDED PROTEIN BINDING |
AT3G25100 | Predictedsynthetic growth defect | FSW = 0.0340
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT5G50680 | PredictedPhenotypic Enhancement | FSW = 0.0324
| Unknown | SAE1B (SUMO ACTIVATING ENZYME 1B) SUMO ACTIVATING ENZYME |
AT1G07400 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | 178 KDA CLASS I HEAT SHOCK PROTEIN (HSP178-CI) |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G29630 | PredictedPhenotypic Enhancement | FSW = 0.0210
| Unknown | NUCLEASE |
AT5G17220 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) GLUTATHIONE TRANSFERASE |
AT5G12100 | PredictedGene fusion method | FSW = 0.0625
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454