Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07400 - ( 178 kDa class I heat shock protein (HSP178-CI) )
20 Proteins interacs with AT1G07400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20260 | PredictedAffinity Capture-MS | FSW = 0.0062
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G52640 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | NICASTRIN-RELATED |
AT5G47190 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
AT5G37670 | PredictedPhylogenetic profile method | FSW = 0.1391
| Unknown | 157 KDA CLASS I-RELATED SMALL HEAT SHOCK PROTEIN-LIKE (HSP157-CI) |
AT3G21700 | Predictedtwo hybrid | FSW = 0.0328
| Unknown | SGP2 GTP BINDING |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0231
| Unknown | SGP1 GTP BINDING |
AT1G18340 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0115
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT2G18740 | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT1G53540 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.2844
| Unknown | 176 KDA CLASS I SMALL HEAT SHOCK PROTEIN (HSP176C-CI) (AA 1-156) |
AT2G21790 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT5G59720 | PredictedPhylogenetic profile method | FSW = 0.1113
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT3G46230 | PredictedPhylogenetic profile method | FSW = 0.2327
| Unknown | ATHSP174 |
AT5G17270 | PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G10210 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G71790 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT4G37680 | Predictedtwo hybrid | FSW = 0.0199
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G52910 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | ATIM (TIMELESS) |
AT4G26750 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454