Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18740 - ( small nuclear ribonucleoprotein E putative / snRNP-E putative / Sm protein E putative )
26 Proteins interacs with AT2G18740| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G07590
   | PredictedAffinity Capture-MSCo-expression | FSW = 0.5590
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G20960
| PredictedCo-purificationCo-purification | FSW = 0.3951
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G09760
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3828
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT5G64270
| PredictedAffinity Capture-MS | FSW = 0.2627
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT1G09770
| PredictedAffinity Capture-MS | FSW = 0.2676
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G23930
| PredictedAffinity Capture-MStwo hybridCo-expression | FSW = 0.4905
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT1G21190
| Predictedtwo hybrid | FSW = 0.2641
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G03330
| Predictedtwo hybridCo-expression | FSW = 0.2693
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT4G30330
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5986
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT3G50670
| PredictedCo-purificationAffinity Capture-MS | FSW = 0.1047
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3186
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT1G20580
| PredictedAffinity Capture-MSCo-expression | FSW = 0.5065
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G03870
| Predictedtwo hybrid | FSW = 0.1530
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30220
| Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-MSCo-expression | FSW = 0.4652
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT1G04510
| PredictedCo-purificationCo-expression | FSW = 0.3377
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G41500
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3349
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT1G80070
| PredictedAffinity Capture-MS | FSW = 0.3745
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT3G55200 | PredictedAffinity Capture-MS | FSW = 0.2817
| Unknown | SPLICING FACTOR PUTATIVE |
| AT1G61040
| Predictedtwo hybrid | FSW = 0.0138
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
| AT4G03430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2768
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT2G32160
| PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
| AT1G60170
| PredictedAffinity Capture-MS | FSW = 0.4905
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT1G44910
| PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.2514
| Unknown | PROTEIN BINDING |
| AT1G07400
| PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | 178 KDA CLASS I HEAT SHOCK PROTEIN (HSP178-CI) |
| AT5G06160
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3273
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT4G31790
| Predictedtwo hybridCo-expression | FSW = 0.1091
| Unknown | DIPHTHINE SYNTHASE PUTATIVE (DPH5) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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