Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G61040 - ( VIP5 (vernalization independence 5) DNA binding )

83 Proteins interacs with AT1G61040
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G44610

Predicted

interaction prediction

FSW = 0.0258

Unknown

 RAB6A GTP BINDING / PROTEIN BINDING
AT3G22630

Predicted

Affinity Capture-MS

FSW = 0.0458

Unknown

 PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G22110

Predicted

Synthetic Lethality

FSW = 0.0882

Unknown

 PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0361

Unknown

 PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G43530

Predicted

Phenotypic Enhancement

FSW = 0.0371

Unknown

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G35800

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1805

Unknown

 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1452

Unknown

 SEC22 TRANSPORTER
AT2G44680

Predicted

Affinity Capture-MS

FSW = 0.1787

Unknown

 CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT2G18510

Predicted

two hybrid

interaction prediction

FSW = 0.0078

Unknown

 EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G12810

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2228

Unknown

 PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G04610

Predicted

interologs mapping

FSW = 0.0116

Unknown

 FLK (FLOWERING LOCUS KH DOMAIN) RNA BINDING / NUCLEIC ACID BINDING
AT3G13445

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0312

Unknown

 TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0240

Unknown

 RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G18040

Predicted

Synthetic Lethality

FSW = 0.0447

Unknown

 CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT4G10710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2082

Unknown

 SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT3G57150

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

 NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G10670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2051

Unknown

 GTC2
AT1G63210

Predicted

synthetic growth defect

FSW = 0.1991

Unknown

 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT1G02740

Predicted

synthetic growth defect

FSW = 0.1377

Unknown

 CHROMATIN BINDING
AT2G36740

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2071

Unknown

 SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT4G25340

Predicted

Phenotypic Enhancement

FSW = 0.0218

Unknown

 IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT1G65440

Predicted

synthetic growth defect

FSW = 0.1515

Unknown

 GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT2G13370

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-Western

two hybrid

FSW = 0.2133

Unknown

 CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G38560

Predicted

Synthetic Lethality

FSW = 0.2799

Unknown

 TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT4G08350

Predicted

Affinity Capture-MS

synthetic growth defect

interaction prediction

FSW = 0.1839

Unknown

 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.1808

Unknown

 STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT1G55520

Predicted

Synthetic Rescue

FSW = 0.0571

Unknown

 TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G18740

Predicted

two hybrid

FSW = 0.0138

Unknown

 SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT4G30330

Predicted

two hybrid

two hybrid

FSW = 0.0088

Unknown

 SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT2G06210

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Synthetic Rescue

interaction prediction

FSW = 0.3222

Unknown

 ELF8 (EARLY FLOWERING 8) BINDING
AT2G44950

Predicted

Phenotypic Suppression

FSW = 0.2496

Unknown

 HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0223

Unknown

 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT3G28730

Predicted

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1814

Unknown

 ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G21710

Predicted

synthetic growth defect

FSW = 0.1056

Unknown

 NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G37560

Predicted

Synthetic Lethality

FSW = 0.0156

Unknown

 ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0039

Unknown

 RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G49540

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1654

Unknown

 NUCLEOTIDE BINDING
AT1G51710

Predicted

Synthetic Lethality

FSW = 0.1837

Unknown

 UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2688

Unknown

 HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G08840Predicted

synthetic growth defect

FSW = 0.0741

Unknown

 EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G32130

Predicted

synthetic growth defect

FSW = 0.2572

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G54390

Predicted

Synthetic Lethality

FSW = 0.1569

Unknown

 PHD FINGER PROTEIN-RELATED
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.2144

Unknown

 SNL5 (SIN3-LIKE 5)
AT1G67190

Predicted

Synthetic Lethality

FSW = 0.1374

Unknown

 F-BOX FAMILY PROTEIN
AT1G79730

Predicted

Synthetic Rescue

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

Synthetic Rescue

interaction prediction

FSW = 0.3927

Unknown

 ELF7 (EARLY FLOWERING 7)
AT2G44150

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.2111

Unknown

 ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G44580

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1099

Unknown

 PROTEIN BINDING / ZINC ION BINDING
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3834

Unknown

 RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.0758

Unknown

 CDC45 (CELL DIVISION CYCLE 45)
AT3G42660

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1966

Unknown

 NUCLEOTIDE BINDING
AT3G58180

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0251

Unknown

 PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN
AT5G09740

Predicted

synthetic growth defect

FSW = 0.1602

Unknown

 HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1127

Unknown

 ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10270

Predicted

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

FSW = 0.1603

Unknown

 CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10790

Predicted

Phenotypic Suppression

FSW = 0.1072

Unknown

 UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G13680

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2127

Unknown

 ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G23290

Predicted

Phenotypic Suppression

FSW = 0.1443

Unknown

 PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G26680

Predicted

Synthetic Lethality

FSW = 0.0977

Unknown

 ENDONUCLEASE PUTATIVE
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.1082

Unknown

 ORMDL FAMILY PROTEIN
AT5G46030

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2337

Unknown

 UNKNOWN PROTEIN
AT5G49510

Predicted

Phenotypic Suppression

FSW = 0.0993

Unknown

 PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G50320

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1672

Unknown

 ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G58410

Predicted

Synthetic Lethality

FSW = 0.2038

Unknown

 BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G61150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

interaction prediction

FSW = 0.3849

Unknown

 VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT2G23070

Predicted

Affinity Capture-MS

FSW = 0.1724

Unknown

 CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT3G06580

Predicted

Synthetic Lethality

FSW = 0.0103

Unknown

 GALK ATP BINDING / GALACTOKINASE
AT3G21060

Predicted

synthetic growth defect

FSW = 0.3095

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G34570

Predicted

Affinity Capture-MS

FSW = 0.0429

Unknown

 THY-2 (THYMIDYLATE SYNTHASE 2) DIHYDROFOLATE REDUCTASE/ THYMIDYLATE SYNTHASE
AT4G38630

Predicted

Synthetic Lethality

FSW = 0.0812

Unknown

 RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G45600

Predicted

Synthetic Lethality

FSW = 0.2567

Unknown

 GAS41 PROTEIN BINDING
AT5G58003

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1633

Unknown

 CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G63670

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2795

Unknown

 SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.1082

Unknown

 LA DOMAIN-CONTAINING PROTEIN
AT5G67290

Predicted

Affinity Capture-MS

FSW = 0.0109

Unknown

 FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN
AT2G16370

Predicted

Affinity Capture-MS

FSW = 0.0248

Unknown

 THY-1 (THYMIDYLATE SYNTHASE 1) DIHYDROFOLATE REDUCTASE/ THYMIDYLATE SYNTHASE
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0181

Unknown

 RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G23080

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1004

Unknown

 CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT3G49660

Predicted

synthetic growth defect

FSW = 0.1709

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G20320

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2248

Unknown

 NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT5G08565

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2625

Unknown

 POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G64750

Predicted

Synthetic Lethality

FSW = 0.0675

Unknown

 ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT2G18000

Predicted

Synthetic Lethality

FSW = 0.2100

Unknown

 TAF14 (TBP-ASSOCIATED FACTOR 14)
AT5G67380

Predicted

interaction prediction

FSW = 0.0366

Unknown

 CKA1 (CASEIN KINASE ALPHA 1) KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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