Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G63210 - ( RNA binding / hydrolase acting on ester bonds / protein binding / transcription elongation regulator )
21 Proteins interacs with AT1G63210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G10670 | PredictedAffinity Capture-MS | FSW = 0.2529
| Class C:nucleus | GTC2 |
AT2G34210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.2670
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G38560 | Predictedsynthetic growth defect | FSW = 0.1254
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT3G17590 | PredictedSynthetic Rescue | FSW = 0.0571
| Class C:nucleus | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT3G06010 | PredictedSynthetic Rescue | FSW = 0.1707
| Class C:nucleus | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G07660 | Predictedinterologs mapping | FSW = 0.0823
| Unknown | HISTONE H4 |
AT4G35800 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.1222
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G12780 | PredictedSynthetic Rescue | FSW = 0.0476
| Unknown | UGE1 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 1) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION |
AT3G28730 | PredictedAffinity Capture-MSco-fractionationCo-fractionationinterologs mappingsynthetic growth defect | FSW = 0.1512
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT4G21710 | Predictedsynthetic growth defect | FSW = 0.1161
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G08565 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.4194
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.0656
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT1G32130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1802
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT2G23080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1512
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G23070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0736
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G09200 | Predictedinterologs mapping | FSW = 0.1659
| Unknown | HISTONE H3 |
AT1G61040 | Predictedsynthetic growth defect | FSW = 0.1991
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT5G46030 | PredictedSynthetic Lethality | FSW = 0.1741
| Unknown | UNKNOWN PROTEIN |
AT3G58560 | PredictedSynthetic RescueSynthetic RescueSynthetic Rescue | FSW = 0.0589
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G15920 | PredictedSynthetic Rescue | FSW = 0.0262
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13570 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454