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AT2G47640 - ( small nuclear ribonucleoprotein D2 putative / snRNP core protein D2 putative / Sm protein D2 putative )

101 Proteins interacs with AT2G47640

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G07590	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3194	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4014	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G20960	Predicted Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3951	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G09760	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3505	Class C: nucleus	U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2009	Class C: nucleus	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT5G64270	Predicted Affinity Capture-MS	FSW = 0.2414	Class C: nucleus	SPLICING FACTOR PUTATIVE
AT5G08290	Predicted Affinity Capture-MS	FSW = 0.3646	Class C: nucleus	YLS8 CATALYTIC
AT3G19840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1688	Class C: nucleus	FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT3G50670	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.1034	Class C: nucleus	U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G41500	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3472	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT2G43810	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1200	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT4G30220	Predicted two hybrid two hybrid two hybrid two hybrid two hybrid two hybrid in vitro in vitro Affinity Capture-MS Affinity Capture-MS two hybrid interaction prediction Co-expression	FSW = 0.4750	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT3G59810	Predicted two hybrid Affinity Capture-MS	FSW = 0.1586	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G03870	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1447	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G19120	Predicted Affinity Capture-MS	FSW = 0.0944	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G23930	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.4137	Class C: nucleus	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT5G27720	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1972	Class C: nucleus	EMB1644 (EMBRYO DEFECTIVE 1644)
AT4G29390	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0751	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT3G11500	Predicted interaction prediction Co-expression	FSW = 0.3319	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE
AT3G62840	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1124	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LIKE-SM RIBONUCLEOPROTEIN CORE (INTERPROIPR001163) LIKE-SM RIBONUCLEOPROTEIN EUKARYOTIC AND ARCHAEA-TYPE CORE (INTERPROIPR006649) LIKE-SM RIBONUCLEOPROTEIN-RELATED CORE (INTERPROIPR010920) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE (TAIRAT2G476404) HAS 535 BLAST HITS TO 535 PROTEINS IN 164 SPECIES ARCHAE - 2 BACTERIA - 0 METAZOA - 239 FUNGI - 109 PLANTS - 78 VIRUSES - 0 OTHER EUKARYOTES - 107 (SOURCE NCBI BLINK)
AT1G20580	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.5000	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3099	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT5G44200	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0439	Class C: nucleus	CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.0376	Class C: nucleus	RNA HELICASE PUTATIVE
AT1G04510	Predicted Affinity Capture-MS Co-purification Co-expression	FSW = 0.2636	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G03330	Predicted two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2401	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT4G30330	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3518	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT2G18740	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3186	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G21190	Predicted Phylogenetic profile method	FSW = 0.1847	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G76860	Predicted Phylogenetic profile method	FSW = 0.2342	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870	Predicted two hybrid two hybrid Affinity Capture-MS two hybrid interaction prediction Co-expression	FSW = 0.2020	Class C: nucleus	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT2G01250	Predicted Affinity Capture-MS	FSW = 0.1047	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.1209	Unknown	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT4G01320	Predicted Affinity Capture-MS	FSW = 0.0021	Unknown	ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT5G24780	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2263	Unknown	VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING
AT4G14800	Predicted Affinity Capture-MS	FSW = 0.0014	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G29990	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2093	Unknown	NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT1G15210	Predicted Affinity Capture-MS	FSW = 0.0973	Unknown	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G23310	Predicted Affinity Capture-MS	FSW = 0.0051	Unknown	GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT4G26970	Predicted Affinity Capture-MS	FSW = 0.1269	Unknown	ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G80070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4082	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT2G33340	Predicted Affinity Capture-MS Co-purification	FSW = 0.2697	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G40370	Predicted Affinity Capture-MS	FSW = 0.0033	Unknown	GLUTAREDOXIN PUTATIVE
AT1G79450	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0098	Unknown	ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT3G02870	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1486	Unknown	VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE
AT4G36860	Predicted Affinity Capture-MS	FSW = 0.0955	Unknown	ZINC ION BINDING
AT1G26630	Predicted two hybrid	FSW = 0.0263	Unknown	FBR12 (FUMONISIN B1-RESISTANT12) TRANSLATION INITIATION FACTOR
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.1209	Unknown	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT1G70490	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1368	Unknown	ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT2G39795	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1988	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT2G18450	Predicted Affinity Capture-MS	FSW = 0.0128	Unknown	SDH1-2 SUCCINATE DEHYDROGENASE
AT3G10920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1663	Unknown	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT3G16050	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1538	Unknown	A37 PROTEIN HETERODIMERIZATION
AT4G15900	Predicted Affinity Capture-MS	FSW = 0.1025	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G77990	Predicted Affinity Capture-MS	FSW = 0.0161	Unknown	AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT1G05830	Predicted Affinity Capture-MS	FSW = 0.0110	Unknown	ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G20696	Predicted Affinity Capture-MS	FSW = 0.0717	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G24706	Predicted Affinity Capture-MS	FSW = 0.1375	Unknown	UNKNOWN PROTEIN
AT1G33090	Predicted Affinity Capture-MS	FSW = 0.0529	Unknown	MATE EFFLUX FAMILY PROTEIN
AT1G48175	Predicted Affinity Capture-MS	FSW = 0.0220	Unknown	EMB2191 (EMBRYO DEFECTIVE 2191) CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT1G63660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2343	Unknown	GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT2G03040	Predicted Affinity Capture-MS	FSW = 0.0350	Unknown	TRANSMEMBRANE PROTEIN-RELATED
AT2G03410	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2575	Unknown	MO25 FAMILY PROTEIN
AT2G03667	Predicted Affinity Capture-MS	FSW = 0.0735	Unknown	ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G31900	Predicted Affinity Capture-MS	FSW = 0.0205	Unknown	XIF MOTOR
AT2G37760	Predicted Affinity Capture-MS	FSW = 0.1276	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G43360	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2547	Unknown	BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G46860	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1304	Unknown	ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G60170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4137	Unknown	EMB1220 (EMBRYO DEFECTIVE 1220)
AT1G66510	Predicted Affinity Capture-MS	FSW = 0.1323	Unknown	AAR2 PROTEIN FAMILY
AT1G73320	Predicted Affinity Capture-MS	FSW = 0.0308	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXPRESSED PROTEIN (TAIRAT1G081251) HAS 1043 BLAST HITS TO 1041 PROTEINS IN 162 SPECIES ARCHAE - 0 BACTERIA - 35 METAZOA - 424 FUNGI - 344 PLANTS - 150 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK)
AT2G32600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1952	Unknown	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT3G03340	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2109	Unknown	UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT3G05760	Predicted Affinity Capture-MS	FSW = 0.1741	Unknown	NUCLEIC ACID BINDING / ZINC ION BINDING
AT4G03430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2926	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G21660	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3132	Unknown	PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT5G06160	Predicted Affinity Capture-MS	FSW = 0.2862	Unknown	ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G41770	Predicted Affinity Capture-MS	FSW = 0.1893	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G12200	Predicted Affinity Capture-MS	FSW = 0.0553	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G27110	Predicted Affinity Capture-MS	FSW = 0.0240	Unknown	PEPTIDASE M48 FAMILY PROTEIN
AT3G30842	Predicted Affinity Capture-MS	FSW = 0.1157	Unknown	PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G52560	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1669	Unknown	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G54150	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2079	Unknown	EMBRYO-ABUNDANT PROTEIN-RELATED
AT3G55220	Predicted Affinity Capture-MS	FSW = 0.3441	Unknown	SPLICING FACTOR PUTATIVE
AT3G59410	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2159	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT4G09150	Predicted Affinity Capture-MS	FSW = 0.0103	Unknown	T-COMPLEX PROTEIN 11
AT4G26810	Predicted Affinity Capture-MS	FSW = 0.0751	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G33070	Predicted Affinity Capture-MS	FSW = 0.0148	Unknown	PYRUVATE DECARBOXYLASE PUTATIVE
AT4G35620	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1498	Unknown	CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G09630	Predicted Affinity Capture-MS	FSW = 0.0704	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G13860	Predicted Affinity Capture-MS	FSW = 0.0161	Unknown	ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G19150	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1930	Unknown	CARBOHYDRATE KINASE FAMILY
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.1214	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G24410	Predicted Affinity Capture-MS	FSW = 0.0082	Unknown	GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G24670	Predicted Affinity Capture-MS	FSW = 0.0128	Unknown	CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G46400	Predicted Affinity Capture-MS	FSW = 0.3050	Unknown	PRP39-2
AT5G57890	Predicted Affinity Capture-MS	FSW = 0.1317	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT3G16650	Predicted Affinity Capture-MS	FSW = 0.0953	Unknown	PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)
AT1G44910	Predicted Affinity Capture-MS	FSW = 0.1123	Unknown	PROTEIN BINDING
AT1G11650	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0840	Unknown	RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE
AT1G08125	Predicted Affinity Capture-MS	FSW = 0.0256	Unknown	EXPRESSED PROTEIN

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G47640 - ( small nuclear ribonucleoprotein D2 putative / snRNP core protein D2 putative / Sm protein D2 putative )

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