Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G06160 - ( ATO (ATROPOS) nucleic acid binding / zinc ion binding )
69 Proteins interacs with AT5G06160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25520 | Predictedtwo hybrid | FSW = 0.0247
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G07590 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3311
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT4G02840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4421
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4130
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5118
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3824
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.4110
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3881
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G55200 | Predictedinterologs mappingtwo hybridinteraction prediction | FSW = 0.3050
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G52150 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G33340 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSCo-purificationCo-expression | FSW = 0.2991
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G16130 | Predictedtwo hybrid | FSW = 0.0274
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7C) |
AT5G39740 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0132
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT1G29310 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT2G30260 | PredictedPhenotypic EnhancementPhenotypic SuppressionAffinity Capture-MS | FSW = 0.0830
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G08290 | PredictedAffinity Capture-MS | FSW = 0.4386
| Unknown | YLS8 CATALYTIC |
AT2G18510 | PredictedAffinity Capture-MS | FSW = 0.1293
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G19840 | PredictedAffinity Capture-MS | FSW = 0.2496
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.2862
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT2G41500 | PredictedAffinity Capture-MS | FSW = 0.3333
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT4G30220 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4091
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G23930 | PredictedAffinity Capture-MSCo-expression | FSW = 0.5008
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.1778
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT3G11500 | Predictedinteraction predictionCo-expression | FSW = 0.4461
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
AT1G20580 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5128
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G28060 | PredictedAffinity Capture-MS | FSW = 0.3353
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT1G06960 | PredictedPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionCo-expression | FSW = 0.0298
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G04510 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3021
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G36740 | Predictedtwo hybrid | FSW = 0.0104
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G20010 | Predictedtwo hybridinteraction prediction | FSW = 0.0240
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT5G41020 | Predictedtwo hybrid | FSW = 0.0144
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT1G11100 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / ZINC FINGER PROTEIN-RELATED |
AT4G30330 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3605
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT2G18740 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3273
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT3G02560 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0154
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT4G16420 | Predictedtwo hybrid | FSW = 0.0015
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G14250 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0309
| Unknown | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT4G15900 | PredictedAffinity Capture-MS | FSW = 0.1737
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G14640 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridSynthetic RescueSynthetic LethalityReconstituted ComplexReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSin vitroin vivotwo hybridtwo hybridin vivoin vitroAffinity Capture-MSinterologs mapping | FSW = 0.5354
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT2G34250 | Predictedtwo hybridtwo hybrid | FSW = 0.0171
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT1G12370 | Predictedtwo hybridtwo hybrid | FSW = 0.0556
| Unknown | PHR1 (PHOTOLYASE 1) DNA PHOTOLYASE |
AT1G14650 | Predictedtwo hybridtwo hybridin vitroin vivotwo hybridin vivoin vitroAffinity Capture-MSCo-expression | FSW = 0.0957
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN / UBIQUITIN FAMILY PROTEIN |
AT1G27752 | Predictedtwo hybrid | FSW = 0.0317
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST CONTAINS INTERPRO DOMAIN/S UBIQUITIN SYSTEM COMPONENT CUE (INTERPROIPR003892) HAS 330 BLAST HITS TO 312 PROTEINS IN 96 SPECIES ARCHAE - 0 BACTERIA - 26 METAZOA - 143 FUNGI - 77 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK) |
AT1G66520 | Predictedtwo hybridtwo hybrid | FSW = 0.0123
| Unknown | PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE |
AT3G27530 | Predictedtwo hybridtwo hybrid | FSW = 0.0173
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT5G41770 | Predictedtwo hybridtwo hybridAffinity Capture-MSCo-expression | FSW = 0.2530
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT2G02570 | PredictedAffinity Capture-MS | FSW = 0.1216
| Unknown | NUCLEIC ACID BINDING |
AT2G32600 | Predictedinteraction predictionSynthetic LethalityReconstituted ComplexReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroin vivoin vivoin vitrointerologs mappingCo-expression | FSW = 0.3721
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G17070 | PredictedAffinity Capture-MS | FSW = 0.3013
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G60170 | PredictedAffinity Capture-MS | FSW = 0.4384
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT2G15900 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
AT2G40430 | Predictedtwo hybridCo-expression | FSW = 0.0056
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT3G05760 | PredictedAffinity Capture-MS | FSW = 0.2043
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G55220 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.5303
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G21660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5111
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT1G64520 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G20000 | Predictedtwo hybrid | FSW = 0.0095
| Unknown | HBT (HOBBIT) BINDING |
AT3G17660 | PredictedSynthetic Lethality | FSW = 0.0947
| Unknown | AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0045
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G03430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2840
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G21110 | PredictedAffinity Capture-MS | FSW = 0.1811
| Unknown | G10 FAMILY PROTEIN |
AT5G42190 | Predictedtwo hybrid | FSW = 0.0027
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G28740 | PredictedAffinity Capture-MS | FSW = 0.1986
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT5G46400 | PredictedAffinity Capture-MS | FSW = 0.3592
| Unknown | PRP39-2 |
AT1G64750 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0088
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT1G30090 | Predictedtwo hybrid | FSW = 0.0352
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT3G07740 | Predictedtwo hybrid | FSW = 0.0056
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G52980 | Predictedinteraction predictionCo-expression | FSW = 0.0566
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G09620 | Predictedinteraction prediction | FSW = 0.1081
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454