Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20000 - ( HBT (HOBBIT) binding )
48 Proteins interacs with AT2G20000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G13300 | Experimentalfar western blotting | FSW = 0.0501
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT2G40330 | Experimental | FSW = 0.0523
| Unknown | BET V I ALLERGEN FAMILY PROTEIN |
AT5G26900 | Experimental | FSW = 0.1316
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G27570 | Experimental | FSW = 0.0373
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G22910 | Experimental | FSW = 0.2338
| Unknown | FZR2 (FIZZY-RELATED 2) SIGNAL TRANSDUCER |
AT4G11920 | Experimental | FSW = 0.1204
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT5G13840 | Experimental | FSW = 0.2009
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT4G33270 | Experimental | FSW = 0.3035
| Unknown | CDC201 SIGNAL TRANSDUCER |
AT2G18290 | Experimental | FSW = 0.1507
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0025
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G06290 | PredictedReconstituted Complex | FSW = 0.0126
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT3G48750 | Predictedbiochemical | FSW = 0.0659
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G27450 | Predictedbiochemical | FSW = 0.0178
| Unknown | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0084
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT2G18040 | Predictedin vitroAffinity Capture-MSin vitro | FSW = 0.0119
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G03280 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT1G70920 | PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | ATHB18 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 18) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G18340 | PredictedAffinity Capture-MS | FSW = 0.0464
| Unknown | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT1G05055 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0310
| Unknown | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G65470 | Predictedtwo hybrid | FSW = 0.0409
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT3G15220 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G55750 | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT2G03120 | Predictedbiochemical | FSW = 0.0070
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT1G52300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0204
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G25980 | PredictedAffinity Capture-Westernin vivoAffinity Capture-MSCo-expression | FSW = 0.0520
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G62430 | PredictedSynthetic Lethality | FSW = 0.0241
| Unknown | ATCDS1 PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
AT5G40820 | PredictedPhenotypic Enhancement | FSW = 0.0216
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT2G42810 | Predictedin vitrotwo hybrid | FSW = 0.0315
| Unknown | PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G32720 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
AT1G06590 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westernin vivo | FSW = 0.3634
| Unknown | UNKNOWN PROTEIN |
AT2G33560 | Predictedin vivoAffinity Capture-MS | FSW = 0.0424
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT4G21530 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4148
| Unknown | NUCLEOTIDE BINDING |
AT2G39090 | PredictedAffinity Capture-Western | FSW = 0.2078
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT3G05870 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternDosage Growth Defectinterologs mapping | FSW = 0.2119
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT5G05560 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.3256
| Unknown | EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE |
AT1G16360 | PredictedAffinity Capture-MSSynthetic Rescue | FSW = 0.0416
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G17070 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G20920 | Predictedbiochemical | FSW = 0.0036
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G77720 | Predictedinterologs mappingCo-expression | FSW = 0.1021
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G78770 | Predictedinteraction predictiontwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.1171
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G04660 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSDosage Growth DefectCo-expression | FSW = 0.1279
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G27970 | PredictedAffinity Capture-Western | FSW = 0.0791
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G48150 | Predictedinteraction predictiontwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1880
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT5G27740 | PredictedSynthetic LethalityCo-expression | FSW = 0.0110
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G14390 | Predictedbiochemical | FSW = 0.0149
| Unknown | DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE |
AT5G06160 | Predictedtwo hybrid | FSW = 0.0095
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G20610 | PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.1149
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G27960 | PredictedAffinity Capture-Western | FSW = 0.0787
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454