Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05870 - ( APC11 protein binding / ubiquitin-protein ligase/ zinc ion binding )
21 Proteins interacs with AT3G05870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G04660 | Experimentaltwo hybridAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.2010
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G56090 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | ATFER3 (FERRITIN 3) BINDING / FERRIC IRON BINDING / OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT2G04390 | PredictedSynthetic Lethality | FSW = 0.0133
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT1G20090 | PredictedSynthetic Lethality | FSW = 0.0215
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT4G35020 | PredictedSynthetic Lethality | FSW = 0.0185
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT1G64230 | PredictedbiochemicalReconstituted ComplexEnriched domain pair | FSW = 0.0248
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT4G25630 | PredictedSynthetic Lethality | FSW = 0.0037
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G22920 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | CSN5A (COP9 SIGNALOSOME 5A) |
AT1G06590 | Predictedin vivo | FSW = 0.4020
| Unknown | UNKNOWN PROTEIN |
AT2G20000 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternDosage Growth Defectinterologs mapping | FSW = 0.2119
| Unknown | HBT (HOBBIT) BINDING |
AT5G05560 | PredictedReconstituted Complex | FSW = 0.2816
| Unknown | EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE |
AT1G78770 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.0776
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G18290 | PredictedAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.2375
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT2G45500 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0061
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G48150 | PredictedAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.1935
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT4G15770 | PredictedSynthetic Lethality | FSW = 0.0446
| Unknown | RNA BINDING / PROTEIN BINDING |
AT5G41700 | PredictedReconstituted Complexbiochemical | FSW = 0.0176
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G21530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4181
| Unknown | NUCLEOTIDE BINDING |
AT3G55280 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G27960 | Predictedtwo hybrid | FSW = 0.0756
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454