Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G05870 - ( APC11 protein binding / ubiquitin-protein ligase/ zinc ion binding )

21 Proteins interacs with AT3G05870
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G04660

Experimental

two hybrid

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.2010

Unknown

APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G56090

Predicted

two hybrid

FSW = 0.0395

Unknown

ATFER3 (FERRITIN 3) BINDING / FERRIC IRON BINDING / OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT2G04390

Predicted

Synthetic Lethality

FSW = 0.0133

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT1G20090

Predicted

Synthetic Lethality

FSW = 0.0215

Unknown

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT4G35020

Predicted

Synthetic Lethality

FSW = 0.0185

Unknown

ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT1G64230

Predicted

biochemical

Reconstituted Complex

Enriched domain pair

FSW = 0.0248

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT4G25630

Predicted

Synthetic Lethality

FSW = 0.0037

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G22920

Predicted

two hybrid

FSW = 0.0267

Unknown

CSN5A (COP9 SIGNALOSOME 5A)
AT1G06590

Predicted

in vivo

FSW = 0.4020

Unknown

UNKNOWN PROTEIN
AT2G20000

Predicted

interaction prediction

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Dosage Growth Defect

interologs mapping

FSW = 0.2119

Unknown

HBT (HOBBIT) BINDING
AT5G05560

Predicted

Reconstituted Complex

FSW = 0.2816

Unknown

EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE
AT1G78770

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

interaction prediction

FSW = 0.0776

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT2G18290

Predicted

Affinity Capture-MS

interologs mapping

interaction prediction

FSW = 0.2375

Unknown

ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY
AT2G45500

Predicted

Affinity Capture-MS

FSW = 0.0392

Unknown

ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G27000

Predicted

Synthetic Lethality

FSW = 0.0061

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G48150

Predicted

Affinity Capture-MS

interologs mapping

interaction prediction

FSW = 0.1935

Unknown

APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING
AT4G15770

Predicted

Synthetic Lethality

FSW = 0.0446

Unknown

RNA BINDING / PROTEIN BINDING
AT5G41700

Predicted

Reconstituted Complex

biochemical

FSW = 0.0176

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G21530Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4181

Unknown

NUCLEOTIDE BINDING
AT3G55280

Predicted

two hybrid

FSW = 0.0122

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27960

Predicted

two hybrid

FSW = 0.0756

Unknown

CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454