Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G15220 - ( protein kinase putative )
22 Proteins interacs with AT3G15220Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0433
| Class C:nucleus | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT2G31660 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0178
| Class C:nucleus | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT2G38940 | Predictedinteraction prediction | FSW = 0.0356
| Unknown | ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G58730 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0160
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0125
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G54700 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G60670 | Predictedtwo hybrid | FSW = 0.0427
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12C) |
AT3G12050 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0160
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT1G03090 | PredictedAffinity Capture-MS | FSW = 0.0923
| Unknown | MCCA METHYLCROTONOYL-COA CARBOXYLASE |
AT3G27380 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0395
| Unknown | SDH2-1 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT4G35260 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G03730 | PredictedAffinity Capture-MSin vivoin vitrotwo hybrid | FSW = 0.0159
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G11330 | Predictedtwo hybrid | FSW = 0.0141
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT2G15790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0125
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G19170 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | SLP3 SERINE-TYPE PEPTIDASE |
AT3G11270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0223
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT2G20000 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | HBT (HOBBIT) BINDING |
AT3G27000 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0439
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G58460 | Predictedbiochemical | FSW = 0.0368
| Unknown | ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) |
AT5G62030 | Predictedbiochemical | FSW = 0.0305
| Unknown | DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN |
AT5G10660 | Predictedinteraction prediction | FSW = 0.0659
| Unknown | CALMODULIN-BINDING PROTEIN-RELATED |
AT1G31840 | PredictedGene fusion method | FSW = 0.0324
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT3G224701) HAS 23098 BLAST HITS TO 5773 PROTEINS IN 180 SPECIES ARCHAE - 3 BACTERIA - 16 METAZOA - 407 FUNGI - 450 PLANTS - 21304 VIRUSES - 0 OTHER EUKARYOTES - 918 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454