Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20610 - ( CYCB23 (Cyclin B23) cyclin-dependent protein kinase regulator )
48 Proteins interacs with AT1G20610Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentalprotein complementation assay | FSW = 0.0954
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G03415 | Experimentaltwo hybrid | FSW = 0.0223
| Unknown | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
AT1G18040 | Experimentalprotein complementation assay | FSW = 0.0716
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT1G73690 | Experimentalprotein complementation assay | FSW = 0.0748
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G11920 | Experimentalprotein complementation assay | FSW = 0.1027
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT5G13840 | Experimentalprotein complementation assay | FSW = 0.0639
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT3G54180 | Experimentalprotein complementation assay | FSW = 0.0798
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.0976
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G67260 | Experimentaltwo hybrid | FSW = 0.0604
| Unknown | CYCD32 (CYCLIN D32) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G37630 | Experimentaltwo hybrid | FSW = 0.1784
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT3G47520 | Predictedinterologs mapping | FSW = 0.0198
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0062
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G61520 | Predictedinterologs mappinginterologs mapping | FSW = 0.0277
| Unknown | LHCA3 CHLOROPHYLL BINDING |
AT2G37620 | Predictedsynthetic growth defect | FSW = 0.0108
| Unknown | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07670 | Predictedinterologs mapping | FSW = 0.0070
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0220
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT3G57290 | PredictedDosage Growth Defect | FSW = 0.0121
| Unknown | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
AT3G57660 | PredictedPhenotypic Enhancement | FSW = 0.0154
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0027
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G44900 | PredictedPhenotypic Suppression | FSW = 0.0363
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G25150 | PredictedPhenotypic Suppression | FSW = 0.0084
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT1G55750 | PredictedPhenotypic Enhancement | FSW = 0.0429
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT5G28060 | PredictedSynthetic Rescue | FSW = 0.0246
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT5G45550 | PredictedAffinity Capture-MS | FSW = 0.0975
| Unknown | MOB1/PHOCEIN FAMILY PROTEIN |
AT1G08780 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0319
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0483
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0267
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G27970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinterologs mappinginteraction prediction | FSW = 0.1775
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G34770 | PredictedPhenotypic Enhancement | FSW = 0.0134
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G12690 | Predictedinterologs mappinginterologs mapping | FSW = 0.0187
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G22480 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0360
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G42660 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.0717
| Unknown | NUCLEOTIDE BINDING |
AT5G23290 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0248
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0468
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT1G69380 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0667
| Unknown | UNKNOWN PROTEIN |
AT4G33080 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G07270 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0515
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G14400 | PredictedPhenotypic Enhancement | FSW = 0.0129
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G32490 | Predictedinterologs mapping | FSW = 0.0136
| Unknown | ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G78770 | Predictedinterologs mapping | FSW = 0.0241
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G20000 | PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.1149
| Unknown | HBT (HOBBIT) BINDING |
AT5G08420 | PredictedSynthetic Lethality | FSW = 0.0033
| Unknown | RNA BINDING |
AT2G16440 | PredictedPhenotypic Suppression | FSW = 0.0223
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT4G33270 | PredictedAffinity Capture-Western | FSW = 0.0793
| Unknown | CDC201 SIGNAL TRANSDUCER |
AT5G27620 | PredictedSynthetic Lethality | FSW = 0.0904
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G63920 | Predictedinterologs mapping | FSW = 0.0436
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT4G35620 | PredictedEnriched domain pairGene fusion method | FSW = 0.0273
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G17620 | PredictedEnriched domain pairGene fusion method | FSW = 0.0107
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454