Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G61520 - ( LHCA3 chlorophyll binding )

21 Proteins interacs with AT1G61520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G31330

Experimental

co-fractionation

Co-fractionation

FSW = 0.1667

Class A:

plastid

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 PSAF (PHOTOSYSTEM I SUBUNIT F)
AT4G28750

Experimental

co-fractionation

Co-fractionation

FSW = 0.1667

Class A:

plastid

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 PSAE-1 (PSA E1 KNOCKOUT) CATALYTIC
AT4G12800

Experimental

co-fractionation

Co-fractionation

FSW = 0.1333

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 PSAL (PHOTOSYSTEM I SUBUNIT L)
AT3G61470

Experimental

co-fractionation

Co-fractionation

FSW = 0.1333

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 LHCA2 CHLOROPHYLL BINDING
AT3G47470

Experimental

co-fractionation

Co-fractionation

FSW = 0.1111

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) CHLOROPHYLL BINDING
AT4G02770

Experimental

co-fractionation

Co-fractionation

FSW = 0.1111

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 PSAD-1 (PHOTOSYSTEM I SUBUNIT D-1)
AT3G16140

Experimental

co-fractionation

Co-fractionation

FSW = 0.1667

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 PSAH-1 (PHOTOSYSTEM I SUBUNIT H-1)
ARTHCP075Experimental

co-fractionation

Co-fractionation

FSW = 0.1667

Unknown

 PSAH-1 (PHOTOSYSTEM I SUBUNIT H-1)
ARTHCP022Experimental

co-fractionation

Co-fractionation

FSW = 0.1333

Unknown

 PSAH-1 (PHOTOSYSTEM I SUBUNIT H-1)
ARTHCP021Experimental

co-fractionation

Co-fractionation

FSW = 0.1667

Unknown

 PSAH-1 (PHOTOSYSTEM I SUBUNIT H-1)
AT5G19320

Predicted

Affinity Capture-MS

FSW = 0.0379

Class C:

plastid

 RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT3G51460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

FSW = 0.0282

Unknown

 RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT1G20610

Predicted

interologs mapping

interologs mapping

FSW = 0.0277

Unknown

 CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G61010

Predicted

Affinity Capture-MS

FSW = 0.0148

Unknown

 CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING
AT2G16740

Predicted

Synthetic Lethality

FSW = 0.0039

Unknown

 UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT4G19880

Predicted

Affinity Capture-MS

FSW = 0.0197

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT1G69380

Predicted

interologs mapping

FSW = 0.0775

Unknown

 UNKNOWN PROTEIN
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.0059

Unknown

 DEAD/DEAH BOX HELICASE PUTATIVE
AT2G15910

Predicted

Affinity Capture-MS

FSW = 0.0098

Unknown

 CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT2G22040

Predicted

Affinity Capture-MS

FSW = 0.0119

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G32850

Predicted

Affinity Capture-MS

FSW = 0.0320

Unknown

 NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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