Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G19880 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN response to cadmium ion LOCATED IN chloroplast EXPRESSED IN 23 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Glutathione S-transferase predicted (InterProIPR016639) Glutathione S-transferase C-terminal (InterProIPR004046) Glutathione S-transferase C-terminal-like (InterProIPR010987) Glutathione S-transferase/chloride channel C-terminal (InterProIPR017933) Thioredoxin-like fold (InterProIPR012336) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G450201) Has 1635 Blast hits to 1635 proteins in 489 species Archae - 12 Bacteria - 905 Metazoa - 23 Fungi - 158 Plants - 57 Viruses - 0 Other Eukaryotes - 480 (source NCBI BLink) )

69 Proteins interacs with AT4G19880
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Affinity Capture-MS

FSW = 0.0322

Unknown

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT2G33210

Predicted

pull down

FSW = 0.0047

Unknown

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT2G17360

Predicted

interologs mapping

FSW = 0.0284

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G47520

Predicted

Phenotypic Suppression

interologs mapping

FSW = 0.0509

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G20260

Predicted

Phenotypic Enhancement

FSW = 0.0753

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT2G37270

Predicted

Synthetic Lethality

FSW = 0.0401

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G13080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0327

Unknown

ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT3G57990

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1004

Unknown

UNKNOWN PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0442

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G38890

Predicted

pull down

FSW = 0.0304

Unknown

DIHYDROURIDINE SYNTHASE FAMILY PROTEIN
AT1G74560

Predicted

Synthetic Lethality

FSW = 0.2084

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT3G22890

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1279

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT4G33650

Predicted

Synthetic Lethality

FSW = 0.1494

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT1G19660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

co-fractionation

Co-fractionation

co-fractionation

Co-fractionation

Synthetic Lethality

Affinity Capture-MS

FSW = 0.0553

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT5G51820

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1170

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT1G61520

Predicted

Affinity Capture-MS

FSW = 0.0197

Unknown

LHCA3 CHLOROPHYLL BINDING
AT1G10070

Predicted

biochemical

FSW = 0.0350

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G03650

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0720

Unknown

SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT2G45710

Predicted

Affinity Capture-Western

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

co-fractionation

Co-fractionation

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1367

Unknown

40S RIBOSOMAL PROTEIN S27 (RPS27A)
AT3G51460

Predicted

Affinity Capture-MS

FSW = 0.0097

Unknown

RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT5G47510

Predicted

Phenotypic Enhancement

FSW = 0.0342

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT3G25800

Predicted

two hybrid

FSW = 0.0219

Unknown

PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT4G08800Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2066

Unknown

PROTEIN KINASE PUTATIVE
AT1G80050

Predicted

Synthetic Lethality

FSW = 0.1368

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT2G07640

Predicted

Phenotypic Enhancement

FSW = 0.0270

Unknown

D2D4-DIENOYL-COA REDUCTASE-RELATED
AT1G76300

Predicted

Synthetic Rescue

FSW = 0.0423

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT3G18600

Predicted

Phenotypic Enhancement

FSW = 0.0234

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G45710

Predicted

Affinity Capture-MS

FSW = 0.0285

Unknown

RHA1 (ROOT HANDEDNESS 1) DNA BINDING / TRANSCRIPTION FACTOR
AT1G21190

Predicted

interologs mapping

FSW = 0.0157

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G47510

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-MS

interologs mapping

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0725

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT4G10040

Predicted

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

FSW = 0.0431

Unknown

CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT2G14610

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-MS

Reconstituted Complex

co-fractionation

Co-fractionation

Phenotypic Suppression

FSW = 0.1087

Unknown

PR1 (PATHOGENESIS-RELATED GENE 1)
AT4G25780

Predicted

Affinity Capture-MS

FSW = 0.0154

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G33730

Predicted

synthetic growth defect

FSW = 0.0055

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G47720

Predicted

Affinity Capture-MS

FSW = 0.0125

Unknown

ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT2G17800

Predicted

Affinity Capture-MS

FSW = 0.0364

Unknown

ARAC1 GTP BINDING
AT1G77990

Predicted

Affinity Capture-MS

FSW = 0.0321

Unknown

AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT1G05180

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT3G02570

Predicted

pull down

FSW = 0.0148

Unknown

MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) MANNOSE-6-PHOSPHATE ISOMERASE
AT4G11640

Predicted

pull down

FSW = 0.0317

Unknown

ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) SERINE RACEMASE
AT1G05660

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G10210

Predicted

Synthetic Lethality

biochemical

Phenotypic Enhancement

FSW = 0.0692

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G52500

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1432

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT2G31260

Predicted

Synthetic Lethality

FSW = 0.0710

Unknown

APG9 (AUTOPHAGY 9)
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0238

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G48100

Predicted

Synthetic Lethality

FSW = 0.1279

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G22290

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1052

Unknown

UNKNOWN PROTEIN
AT3G24495

Predicted

Phenotypic Enhancement

FSW = 0.0677

Unknown

MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT3G26690

Predicted

Synthetic Lethality

FSW = 0.1250

Unknown

ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE
AT3G59540Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1097

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT3G60245

Predicted

Synthetic Lethality

FSW = 0.0848

Unknown

60S RIBOSOMAL PROTEIN L37A (RPL37AC)
AT1G05830

Predicted

two hybrid

FSW = 0.0157

Unknown

ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G35350

Predicted

synthetic growth defect

FSW = 0.1281

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G55810

Predicted

interologs mapping

Phenotypic Suppression

FSW = 0.0256

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G60730

Predicted

Affinity Capture-MS

FSW = 0.0411

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G01600

Predicted

Phenotypic Enhancement

FSW = 0.1832

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT2G20290

Predicted

Affinity Capture-MS

FSW = 0.0286

Unknown

XIG MOTOR/ PROTEIN BINDING
AT3G02320

Predicted

interologs mapping

FSW = 0.0801

Unknown

RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE
AT4G27130

Predicted

synthetic growth defect

FSW = 0.1177

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G31985

Predicted

Affinity Capture-MS

FSW = 0.0141

Unknown

60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT5G66610

Predicted

biochemical

two hybrid

FSW = 0.0325

Unknown

DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING
AT4G29140

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

MATE EFFLUX PROTEIN-RELATED
AT4G32930

Predicted

Synthetic Lethality

FSW = 0.1367

Unknown

UNKNOWN PROTEIN
AT5G48010

Predicted

Phenotypic Enhancement

FSW = 0.0317

Unknown

THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE
AT5G49970

Predicted

Phenotypic Enhancement

FSW = 0.0854

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G59850Predicted

Affinity Capture-MS

FSW = 0.0157

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT5G44990

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1333

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN STEM CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 479 (SOURCE NCBI BLINK)
AT5G45020

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0909

Unknown

LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 907 METAZOA - 22 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 478 (SOURCE NCBI BLINK)
AT5G44000

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1081

Unknown

GLUTATHIONE S-TRANSFERASE C-TERMINAL DOMAIN-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454