Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G19880 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN response to cadmium ion LOCATED IN chloroplast EXPRESSED IN 23 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Glutathione S-transferase predicted (InterProIPR016639) Glutathione S-transferase C-terminal (InterProIPR004046) Glutathione S-transferase C-terminal-like (InterProIPR010987) Glutathione S-transferase/chloride channel C-terminal (InterProIPR017933) Thioredoxin-like fold (InterProIPR012336) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G450201) Has 1635 Blast hits to 1635 proteins in 489 species Archae - 12 Bacteria - 905 Metazoa - 23 Fungi - 158 Plants - 57 Viruses - 0 Other Eukaryotes - 480 (source NCBI BLink) )
69 Proteins interacs with AT4G19880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedAffinity Capture-MS | FSW = 0.0322
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT2G33210 | Predictedpull down | FSW = 0.0047
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT2G17360 | Predictedinterologs mapping | FSW = 0.0284
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G47520 | PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.0509
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.0753
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G37270 | PredictedSynthetic Lethality | FSW = 0.0401
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G13080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0327
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G57990 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1004
| Unknown | UNKNOWN PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0442
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G38890 | Predictedpull down | FSW = 0.0304
| Unknown | DIHYDROURIDINE SYNTHASE FAMILY PROTEIN |
AT1G74560 | PredictedSynthetic Lethality | FSW = 0.2084
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G22890 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1279
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.1494
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT1G19660 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityco-fractionationCo-fractionationco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-MS | FSW = 0.0553
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G51820 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1170
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G61520 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | LHCA3 CHLOROPHYLL BINDING |
AT1G10070 | Predictedbiochemical | FSW = 0.0350
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G03650 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0720
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT2G45710 | PredictedAffinity Capture-WesternAffinity Capture-MSSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-MSAffinity Capture-Western | FSW = 0.1367
| Unknown | 40S RIBOSOMAL PROTEIN S27 (RPS27A) |
AT3G51460 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT5G47510 | PredictedPhenotypic Enhancement | FSW = 0.0342
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G25800 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G08800 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2066
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.1368
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G07640 | PredictedPhenotypic Enhancement | FSW = 0.0270
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT1G76300 | PredictedSynthetic Rescue | FSW = 0.0423
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT3G18600 | PredictedPhenotypic Enhancement | FSW = 0.0234
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G45710 | PredictedAffinity Capture-MS | FSW = 0.0285
| Unknown | RHA1 (ROOT HANDEDNESS 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G21190 | Predictedinterologs mapping | FSW = 0.0157
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G47510 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSSynthetic LethalityAffinity Capture-MSinterologs mappingAffinity Capture-MSAffinity Capture-Western | FSW = 0.0725
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT4G10040 | PredictedAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.0431
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT2G14610 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionationPhenotypic Suppression | FSW = 0.1087
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G33730 | Predictedsynthetic growth defect | FSW = 0.0055
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G47720 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT2G17800 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | ARAC1 GTP BINDING |
AT1G77990 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT1G05180 | PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT3G02570 | Predictedpull down | FSW = 0.0148
| Unknown | MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) MANNOSE-6-PHOSPHATE ISOMERASE |
AT4G11640 | Predictedpull down | FSW = 0.0317
| Unknown | ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) SERINE RACEMASE |
AT1G05660 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G10210 | PredictedSynthetic LethalitybiochemicalPhenotypic Enhancement | FSW = 0.0692
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G52500 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1432
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G31260 | PredictedSynthetic Lethality | FSW = 0.0710
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.1279
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G22290 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1052
| Unknown | UNKNOWN PROTEIN |
AT3G24495 | PredictedPhenotypic Enhancement | FSW = 0.0677
| Unknown | MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT3G26690 | PredictedSynthetic Lethality | FSW = 0.1250
| Unknown | ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE |
AT3G59540 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1097
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT3G60245 | PredictedSynthetic Lethality | FSW = 0.0848
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AC) |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.1281
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G55810 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0256
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G60730 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G01600 | PredictedPhenotypic Enhancement | FSW = 0.1832
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT3G02320 | Predictedinterologs mapping | FSW = 0.0801
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT4G27130 | Predictedsynthetic growth defect | FSW = 0.1177
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G31985 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G66610 | Predictedbiochemicaltwo hybrid | FSW = 0.0325
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT4G32930 | PredictedSynthetic Lethality | FSW = 0.1367
| Unknown | UNKNOWN PROTEIN |
AT5G48010 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.0854
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G59850 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
AT5G44990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1333
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN STEM CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 479 (SOURCE NCBI BLINK) |
AT5G45020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0909
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 907 METAZOA - 22 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 478 (SOURCE NCBI BLINK) |
AT5G44000 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1081
| Unknown | GLUTATHIONE S-TRANSFERASE C-TERMINAL DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454