Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77990 - ( AST56 sulfate transmembrane transporter )
52 Proteins interacs with AT1G77990Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | Predictedbiochemical | FSW = 0.0195
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT1G21720 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G12520 | PredictedGene fusion methodCo-expression | FSW = 0.0584
| Unknown | SULTR42 SULFATE TRANSMEMBRANE TRANSPORTER |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0447
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G09660 | PredictedAffinity Capture-MS | FSW = 0.1150
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G48170 | PredictedAffinity Capture-MS | FSW = 0.0784
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G77750 | PredictedPhenotypic Enhancement | FSW = 0.0624
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE |
AT3G56160 | PredictedAffinity Capture-MS | FSW = 0.0893
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT2G43030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1249
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT5G03650 | PredictedAffinity Capture-MS | FSW = 0.1477
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.2006
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT2G47160 | PredictedReconstituted Complex | FSW = 0.0605
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G04750 | PredictedAffinity Capture-Western | FSW = 0.0779
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT5G60980 | PredictedAffinity Capture-MS | FSW = 0.1129
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0970
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT5G47630 | Predictedbiochemical | FSW = 0.1268
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT1G64880 | PredictedAffinity Capture-MS | FSW = 0.1134
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT2G29540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1319
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G52300 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1035
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G39200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1490
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G10920 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0562
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.0683
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G19730 | PredictedPhenotypic Enhancement | FSW = 0.0716
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G10280 | PredictedAffinity Capture-Western | FSW = 0.0207
| Unknown | UNKNOWN PROTEIN |
AT1G17130 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1114
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G72680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0498
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT1G78770 | Predictedbiochemical | FSW = 0.0400
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G20290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2823
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G23820 | PredictedAffinity Capture-MS | FSW = 0.1351
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT2G30800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1681
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G12200 | PredictedAffinity Capture-MSDosage Growth DefectReconstituted ComplexAffinity Capture-MS | FSW = 0.2291
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G21460 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1384
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.1519
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G14710 | Predictedsynthetic growth defect | FSW = 0.0976
| Unknown | ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT4G19880 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT4G21800 | PredictedReconstituted Complex | FSW = 0.0560
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G35520 | PredictedPhenotypic Suppression | FSW = 0.0660
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT5G13860 | PredictedSynthetic LethalityCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-WesternCo-purificationPhenotypic EnhancementSynthetic LethalityReconstituted Complex | FSW = 0.3870
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14180 | Predictedinterologs mapping | FSW = 0.1427
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G38820 | PredictedAffinity Capture-MS | FSW = 0.0561
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G15910 | PredictedAffinity Capture-MS | FSW = 0.1810
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.3816
| Unknown | XIF MOTOR |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0973
| Unknown | LPAT5 ACYLTRANSFERASE |
AT5G15070 | PredictedAffinity Capture-Western | FSW = 0.0281
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
ATCG00905 | PredictedPhenotypic Enhancement | FSW = 0.0268
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT4G03460 | PredictedGene fusion method | FSW = 0.0459
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454