Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G21460 - ( electron carrier/ protein disulfide oxidoreductase )

60 Proteins interacs with AT3G21460
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0196

Unknown

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G10350

Predicted

biochemical

biochemical

FSW = 0.1252

Unknown

 POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT4G28390

Predicted

Affinity Capture-MS

FSW = 0.0176

Unknown

 AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.0252

Unknown

 HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G60820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0176

Unknown

 PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G22890

Predicted

Synthetic Lethality

FSW = 0.1197

Unknown

 APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT2G45960

Predicted

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.0480

Unknown

 PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT5G09660

Predicted

Synthetic Lethality

FSW = 0.1852

Unknown

 PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT5G23900

Predicted

Synthetic Rescue

FSW = 0.0447

Unknown

 60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT2G32670

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.2151

Unknown

 ATVAMP725
AT1G04750

Predicted

synthetic growth defect

FSW = 0.1493

Unknown

 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G37790

Predicted

synthetic growth defect

FSW = 0.1025

Unknown

 ALDO/KETO REDUCTASE FAMILY PROTEIN
AT5G41370

Predicted

Affinity Capture-Western

Phenotypic Suppression

FSW = 0.0329

Unknown

 XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

 NUCLEOLAR PROTEIN PUTATIVE
AT4G25340

Predicted

synthetic growth defect

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

FSW = 0.1549

Unknown

 IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT1G72480

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G47990

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0320

Unknown

 SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT3G60360

Predicted

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

FSW = 0.1684

Unknown

 EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT4G39200

Predicted

biochemical

FSW = 0.2110

Unknown

 40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT5G10330Predicted

Affinity Capture-MS

FSW = 0.0580

Unknown

 HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT1G77990

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1384

Unknown

 AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

 PSF2
AT2G05840

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0347

Unknown

 PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G29540

Predicted

Synthetic Lethality

FSW = 0.1505

Unknown

 ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G22880

Predicted

Affinity Capture-MS

FSW = 0.0276

Unknown

 DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G05910

Predicted

Affinity Capture-MS

FSW = 0.0294

Unknown

 CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G08940

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1023

Unknown

 PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT1G13580

Predicted

Synthetic Lethality

FSW = 0.2107

Unknown

 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G20693

Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

FSW = 0.1617

Unknown

 HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G29970

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.0805

Unknown

 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G60730

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0465

Unknown

 ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G78770

Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

FSW = 0.1616

Unknown

 CELL DIVISION CYCLE FAMILY PROTEIN
AT2G20290

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0839

Unknown

 XIG MOTOR/ PROTEIN BINDING
AT2G31900

Predicted

Reconstituted Complex

FSW = 0.0816

Unknown

 XIF MOTOR
AT2G47760

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0395

Unknown

 ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT3G05540

Predicted

biochemical

FSW = 0.0117

Unknown

 INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G06470

Predicted

two hybrid

Phenotypic Enhancement

synthetic growth defect

Affinity Capture-Western

FSW = 0.0933

Unknown

 GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G11230

Predicted

synthetic growth defect

FSW = 0.1752

Unknown

 YIPPEE FAMILY PROTEIN
AT3G12200

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1032

Unknown

 ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G26320

Predicted

Synthetic Lethality

FSW = 0.0816

Unknown

 NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G26690

Predicted

synthetic growth defect

FSW = 0.1330

Unknown

 EMP24/GP25L/P24 FAMILY PROTEIN
AT1G35350

Predicted

synthetic growth defect

FSW = 0.1427

Unknown

 LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G47830

Predicted

Synthetic Lethality

FSW = 0.1131

Unknown

 CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G66590

Predicted

synthetic growth defect

FSW = 0.1047

Unknown

 COX19 FAMILY PROTEIN
AT3G06483

Predicted

Synthetic Lethality

FSW = 0.1146

Unknown

 PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G22290

Predicted

synthetic growth defect

FSW = 0.1504

Unknown

 UNKNOWN PROTEIN
AT3G24010

Predicted

Synthetic Lethality

FSW = 0.1819

Unknown

 ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G25900

Predicted

Synthetic Lethality

FSW = 0.2455

Unknown

 HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT3G53030

Predicted

Synthetic Lethality

FSW = 0.1323

Unknown

 SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT4G10480

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

 NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE
AT4G21490

Predicted

Synthetic Lethality

FSW = 0.1421

Unknown

 NDB3 NADH DEHYDROGENASE
AT4G38250

Predicted

synthetic growth defect

FSW = 0.1558

Unknown

 AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G14180

Predicted

synthetic growth defect

FSW = 0.2269

Unknown

 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G16040

Predicted

two hybrid

FSW = 0.0251

Unknown

 REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G16980

Predicted

Synthetic Lethality

FSW = 0.1688

Unknown

 NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G45620

Predicted

Synthetic Lethality

FSW = 0.1762

Unknown

 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G13860

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1149

Unknown

 ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G19510

Predicted

Affinity Capture-MS

FSW = 0.0326

Unknown

 ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2)
AT5G54200

Predicted

Affinity Capture-MS

FSW = 0.0340

Unknown

 WD-40 REPEAT FAMILY PROTEIN
AT5G67540

Predicted

Synthetic Lethality

FSW = 0.1876

Unknown

 GLYCOSYL HYDROLASE FAMILY PROTEIN 43

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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