Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05540 - ( INVOLVED IN biological_process unknown LOCATED IN cytoplasm CONTAINS InterPro DOMAIN/s Translationally controlled tumour protein (InterProIPR018105) Translationally controlled tumour-associated TCTP (InterProIPR001983) Mss4/translationally controlled tumour-associated TCTP (InterProIPR011323) Translationally controlled tumour protein conserved site (InterProIPR018103) Mss4-like (InterProIPR011057) BEST Arabidopsis thaliana protein match is TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) Has 640 Blast hits to 640 proteins in 231 species Archae - 0 Bacteria - 0 Metazoa - 343 Fungi - 110 Plants - 105 Viruses - 0 Other Eukaryotes - 82 (source NCBI BLink) )

44 Proteins interacs with AT3G05540
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G32470

Predicted

Affinity Capture-MS

FSW = 0.2593

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT3G16640

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1713

Unknown

TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)
AT1G72730

Predicted

Phenotypic Suppression

FSW = 0.0192

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT3G56190

Predicted

Affinity Capture-MS

FSW = 0.2189

Unknown

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G22780

Predicted

Affinity Capture-MS

FSW = 0.2509

Unknown

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G54270

Predicted

Affinity Capture-MS

FSW = 0.0385

Unknown

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT4G11150

Predicted

two hybrid

FSW = 0.0313

Unknown

TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G07930Predicted

Affinity Capture-MS

FSW = 0.2855

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G08950

Predicted

Affinity Capture-MS

FSW = 0.2829

Unknown

ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.2178

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.1642

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G15210

Predicted

Affinity Capture-MS

FSW = 0.2513

Unknown

PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G19160

Predicted

Affinity Capture-MS

FSW = 0.0819

Unknown

ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT5G13050

Predicted

Affinity Capture-MS

FSW = 0.3092

Unknown

5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT3G61430

Predicted

Affinity Capture-Western

FSW = 0.0519

Unknown

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT4G36860

Predicted

Affinity Capture-MS

FSW = 0.2412

Unknown

ZINC ION BINDING
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.1763

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0177

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G59870

Predicted

Affinity Capture-MS

FSW = 0.3074

Unknown

HTA6 DNA BINDING
AT3G19210

Predicted

Affinity Capture-MS

FSW = 0.0079

Unknown

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G20970

Predicted

Affinity Capture-MS

FSW = 0.0509

Unknown

NFU4 STRUCTURAL MOLECULE
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.1090

Unknown

A37 PROTEIN HETERODIMERIZATION
AT5G41480

Predicted

Affinity Capture-MS

FSW = 0.3092

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0026

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT3G48150

Predicted

two hybrid

FSW = 0.0267

Unknown

APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING
AT5G19000

Predicted

two hybrid

FSW = 0.0110

Unknown

ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING
AT5G38050

Predicted

two hybrid

FSW = 0.0211

Unknown

UNKNOWN PROTEIN
AT4G15930

Predicted

two hybrid

FSW = 0.0172

Unknown

MICROTUBULE MOTOR
AT1G51770

Predicted

Affinity Capture-MS

FSW = 0.2489

Unknown

UNKNOWN PROTEIN
AT2G29390

Predicted

Affinity Capture-MS

FSW = 0.2856

Unknown

SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT1G11530

Predicted

Affinity Capture-MS

FSW = 0.2784

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G76720

Predicted

Affinity Capture-MS

FSW = 0.3341

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.1036

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT3G21460

Predicted

biochemical

FSW = 0.0117

Unknown

ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G52390

Predicted

Affinity Capture-MS

FSW = 0.2223

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53880

Predicted

Co-purification

FSW = 0.0561

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT5G23290

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.1731

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G41190

Predicted

Affinity Capture-MS

FSW = 0.2024

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT1G43860

Predicted

Affinity Capture-MS

FSW = 0.0544

Unknown

TRANSCRIPTION FACTOR
AT3G10530

Predicted

Affinity Capture-MS

FSW = 0.0201

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G17280

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

UBC34 (UBIQUITIN-CONJUGATING ENZYME 34) UBIQUITIN-PROTEIN LIGASE
AT2G26200

Predicted

two hybrid

two hybrid

FSW = 0.0750

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE TYPE 12 (INTERPROIPR013217) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS METHYLTRANSFERASE (TAIRAT1G546501) HAS 1504 BLAST HITS TO 1429 PROTEINS IN 277 SPECIES ARCHAE - 33 BACTERIA - 213 METAZOA - 664 FUNGI - 202 PLANTS - 139 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK)
AT1G67960

Predicted

two hybrid

FSW = 0.0486

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MEMBRANE PROTEINTAPT1/CMV RECEPTOR (INTERPROIPR008010) HAS 243 BLAST HITS TO 229 PROTEINS IN 123 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 79 FUNGI - 87 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 59 (SOURCE NCBI BLINK)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454