Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05540 - ( INVOLVED IN biological_process unknown LOCATED IN cytoplasm CONTAINS InterPro DOMAIN/s Translationally controlled tumour protein (InterProIPR018105) Translationally controlled tumour-associated TCTP (InterProIPR001983) Mss4/translationally controlled tumour-associated TCTP (InterProIPR011323) Translationally controlled tumour protein conserved site (InterProIPR018103) Mss4-like (InterProIPR011057) BEST Arabidopsis thaliana protein match is TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) Has 640 Blast hits to 640 proteins in 231 species Archae - 0 Bacteria - 0 Metazoa - 343 Fungi - 110 Plants - 105 Viruses - 0 Other Eukaryotes - 82 (source NCBI BLink) )
44 Proteins interacs with AT3G05540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.2593
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT3G16640 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1713
| Unknown | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) |
AT1G72730 | PredictedPhenotypic Suppression | FSW = 0.0192
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.2189
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.2509
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT4G11150 | Predictedtwo hybrid | FSW = 0.0313
| Unknown | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.2855
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.2829
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.2178
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.1642
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.2513
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.0819
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.3092
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G61430 | PredictedAffinity Capture-Western | FSW = 0.0519
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.2412
| Unknown | ZINC ION BINDING |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.1763
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.3074
| Unknown | HTA6 DNA BINDING |
AT3G19210 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.1090
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.3092
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0026
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G48150 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT5G19000 | Predictedtwo hybrid | FSW = 0.0110
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT5G38050 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | UNKNOWN PROTEIN |
AT4G15930 | Predictedtwo hybrid | FSW = 0.0172
| Unknown | MICROTUBULE MOTOR |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.2489
| Unknown | UNKNOWN PROTEIN |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.2856
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.2784
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.3341
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.1036
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G21460 | Predictedbiochemical | FSW = 0.0117
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.2223
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53880 | PredictedCo-purification | FSW = 0.0561
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G23290 | PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1731
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.2024
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT1G43860 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | TRANSCRIPTION FACTOR |
AT3G10530 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G17280 | PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | UBC34 (UBIQUITIN-CONJUGATING ENZYME 34) UBIQUITIN-PROTEIN LIGASE |
AT2G26200 | Predictedtwo hybridtwo hybrid | FSW = 0.0750
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE TYPE 12 (INTERPROIPR013217) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS METHYLTRANSFERASE (TAIRAT1G546501) HAS 1504 BLAST HITS TO 1429 PROTEINS IN 277 SPECIES ARCHAE - 33 BACTERIA - 213 METAZOA - 664 FUNGI - 202 PLANTS - 139 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK) |
AT1G67960 | Predictedtwo hybrid | FSW = 0.0486
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MEMBRANE PROTEINTAPT1/CMV RECEPTOR (INTERPROIPR008010) HAS 243 BLAST HITS TO 229 PROTEINS IN 123 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 79 FUNGI - 87 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 59 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454